Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq297 129 4e-25 seq129 82.4 5e-11 >seq297 Length=62275575 Score = 129 bits (142), Expect = 4e-25 Identities = 298/448 (67%), Gaps = 6/448 (1%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||||||| || || || ||||| || | |||||||| || ||||| | |||||||||| Sbjct 25392430 TGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGC 25392489 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||| || | |||||| | || | Sbjct 25392490 TCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAACTTATTAGCAGAGATG 25392549 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTC 22927 | ||||| |||||||||||||| || || |||| | ||| ||| | |||| || | Sbjct 25392550 AGGGTCTGCACTGTGACTTTGCCTGCCTGATGTTCAAGCACCTGGTACACAAGCCCTCGG 25392609 Query 22928 AGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAG 22987 || | | | | |||| || | | || || || ||| || ||| || || Sbjct 25392610 AGCAGAGAGTAAAAGAAATAATTACCAACGCGGTCAGGATAGAGCAGGAGTTCCTCACAG 25392669 Query 22988 AGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAGT 23047 |||| || || | || |||||| | | |||| | |||||| ||| Sbjct 25392670 AGGCCCTGCCTGTGAAGCTCATCGGGATGAATTGCACCTTGATGAAGCAGTACATCGAGT 25392729 Query 23048 TTGTTGCAGATCGCC---TGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCCA 23104 |||| || || | | |||| || ||||||| | ||||| | || || | | Sbjct 25392730 TTGTGGCCGACAGGCTTATGCTGGA---GCTGGGTTTTAACAAGATTTTCAAAGTAGAAA 25392786 Query 23105 ATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGAACGCC 23164 |||||||||| |||||||| || ||| | ||||| ||||||||||||||||| | Sbjct 25392787 ATCCATTTGACTTCATGGAGAATATTTCACTAGAAGGAAAAACAAACTTCTTTGAGAAGC 25392846 Query 23165 GTGTGAGTGAATATCAGCGAATGGGTGT 23192 | || | || || ||| | ||||| || Sbjct 25392847 GAGTAGGCGAGTACCAGAGGATGGGAGT 25392874 >seq129 Length=145729302 Score = 82.4 bits (90), Expect = 5e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||||||| || ||||| ||||| | | || ||||| |||||||| || |||||||||| Sbjct 76759326 TGGCCTTCGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCATTTGCTGCTATATTCTGGC 76759267 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | |||||||| ||| || | ||||| || || |||| ||| | || | Sbjct 76759266 TAAAGAAGAGAGGCCTCATGCCTGGGCTGACTTTTTCAAATGAACTGATCAGCAGGGATG 76759207 Query 22868 AAG 22870 ||| Sbjct 76759206 AAG 76759204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356229453774865