Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq232 571 8e-158 seq297 419 3e-112 seq117 123 4e-23 seq1 122 1e-22 >seq232 Length=115493446 Score = 571 bits (632), Expect = 8e-158 Identities = 1491/2254 (66%), Gaps = 59/2254 (3%) Strand=Plus/Minus Query 78702 CTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTA 78761 ||| | ||||| || ||||| || || ||| |||||| | || | || ||| || Sbjct 76911781 CTTTTTCTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATA 76911722 Query 78762 CATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATA 78821 ||| | || |||| ||| | |||| || || || |||||||| ||||||||| || Sbjct 76911721 CATCCGAGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTA 76911662 Query 78822 ACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTC 78881 | || || || |||||||| || | ||| || ||||||| || ||| | || || || Sbjct 76911661 GTTGGGCTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTC 76911602 Query 78882 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 78941 || ||||| || | | ||||| || | |||||||| || || ||| | | | |||| Sbjct 76911601 AGCTGCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTT 76911542 Query 78942 AATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATCCTATT 78998 | | || |||| | || || |||||||||| ||| || | ||| ||| Sbjct 76911541 CAGGTTATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATT 76911482 Query 78999 CTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 79058 || |||||||||||||| || ||| || | | || | || | | ||||| || Sbjct 76911481 TTTCATCTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCAC 76911422 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 | ||||||||||| ||||| ||||| | |||||| || ||||||| || | || | Sbjct 76911421 AATCTGAAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAAT 76911362 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || | |||||| | || ||| ||||||||| | || || ||||| || || | | ||| Sbjct 76911361 GGACTGATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAA 76911302 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC 79238 ||| ||||| | |||||| | || || | || ||| | ||| ||||| || || Sbjct 76911301 ACTGTTTCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTC 76911242 Query 79239 AGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGT 79298 | || | ||||||||| | |||||| || |||||||| || || | ||||| Sbjct 76911241 TGTAGGAATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTC 76911182 Query 79299 GTATGTTTCATAAGGTCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCC 79355 || |||| | || || |||||| ||||| ||||| || || || | ||||| Sbjct 76911181 ATACGTTTTGTCGGGGCCATATTCCTT---GGCTAGGTCACAGCTGGCTTCCAGGGCTCC 76911125 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 |||||||||||||| || || | |||||| | || |||||| |||| ||| Sbjct 76911124 ATAATAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA----- 76911070 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | || || || ||||||| ||||| || ||||| || || || | ||| Sbjct 76911069 -----------GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATG 76911021 Query 79476 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 79535 ||||| || | | || ||||||||||| || || || ||||| || |||||||| Sbjct 76911020 GTGTTTATTTGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATT 76910961 Query 79536 GAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC---GTCC 79592 |||| ||| || ||||| || || ||||| ||| ||| | || | Sbjct 76910960 CGGATTTTGGACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTC 76910901 Query 79593 ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGC 79652 | | || ||||||| | || | ||| |||| ||||||| || ||||||| | Sbjct 76910900 TGGTGTGACCTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTC 76910841 Query 79653 ATCCG--CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | || | ||| || || || |||| || || || |||||||| | || Sbjct 76910840 ACTGGTGCAACTC----TATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTC 76910785 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 ||||| | ||||| || ||| || || || || ||| | || ||||| || || Sbjct 76910784 TGTTGGCTGCTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCT 76910725 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTAT-- 79827 |||||| | || || || | ||| | | || | |||| | | | |||| | Sbjct 76910724 GCCTGAGACCCAATGATGGCGTACCAAAGCTGCTGAA--CTTT-TCACA-ACTTTTCAGA 76910669 Query 79828 CTCTTTTCT-CTT-TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGT 79885 | | || ||| ||||| | |||||| |||||||| |||||| |||| |||| Sbjct 76910668 CACGACCCTGCTTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGT 76910609 Query 79886 CTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTT 79945 | | |||||||| || | |||||||||| |||| || | | || |||||| | Sbjct 76910608 CCAGACCAGGACACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCT 76910549 Query 79946 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 80005 |||| ||||||| || |||| ||| || | || ||||| | | | || || || | Sbjct 76910548 TCATGAAGAGATTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCT 76910489 Query 80006 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGT 80058 | ||||| ||||| || | || |||||| | | || || || ||||| || Sbjct 76910488 TGCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGC 76910429 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 | || ||| || || | | ||||| || |||||||| || ||||| | ||| | ||| Sbjct 76910428 TTCAGGTAAATAGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCT 76910370 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 ||||| |||| ||||||| | ||| | || || ||| || | | || ||||| | Sbjct 76910369 GTGTTGTTATGTACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCA 76910310 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 || ||||| ||| |||| |||||| | | | | | || |||||||| || ||| Sbjct 76910309 ATGTAGCTACCAATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTA 76910251 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 || || || | | | || | |||||||| || ||||| ||||| ||| | |||| Sbjct 76910250 GAAATCAAGGAATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATA 76910191 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 80358 | | || ||||||| ||||| || | | | | || || ||||| || | | ||| Sbjct 76910190 CTCAAGAGGAAACAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGA 76910132 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 || || || ||||| || || ||||| ||||||||||| || ||||| || | || ||| Sbjct 76910131 GAGGCTTGAGTAAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATA 76910072 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 || || ||||| || || | || | ||| ||||| ||||| |||| |||| | | Sbjct 76910071 TCTTCTTTGTGAATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACT 76910012 Query 80479 TTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 80538 || | | || |||||||| || || ||||| || ||||||||||| |||||||| Sbjct 76910011 TTTCCACTGATCTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAA 76909952 Query 80539 GAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACA 80598 || | | || || ||||| | || || || | ||| |||| |||| | Sbjct 76909951 ACGAAATTCCAGTCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATG 76909892 Query 80599 TCCA-TGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 80657 || | || ||| ||| | | || ||||||| | | | || | ||||| | ||||| Sbjct 76909891 TCAAGTGCTGA-ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTT 76909833 Query 80658 GAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATAC 80717 | | | |||||||||| | || | || | ||| |||||||| ||||| | || || || Sbjct 76909832 GTAGAGATCCTCCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGAC 76909773 Query 80718 GGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG--TTGTGTAGTA--CAAGTGGCTG 80773 || || || || || | |||||||| || || || | | | ||| || ||||| | Sbjct 76909772 AGCGATCCTTGCTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAG 76909713 Query 80774 CTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGA 80833 || | || || ||||| ||||||| ||| || || || || ||| | | || |||||| Sbjct 76909712 CTGTCTCAGCAGCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGC 76909653 Query 80834 TAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATT 80893 | || ||||| | || | | |||| | | | || | || | |||||||| | || Sbjct 76909652 TTACTTTCATGGTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTT 76909593 Query 80894 TTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 | || || || || ||||| |||||||| || Sbjct 76909592 TCTGGATTCGTGATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 419 bits (464), Expect = 3e-112 Identities = 627/885 (71%), Gaps = 10/885 (1%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | ||||| || || || || || || || || || ||||||||| Sbjct 25392880 GACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCT 25392821 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || | ||| ||||| |||||||| ||||| ||||| || || |||| || ||||| Sbjct 25392820 TCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAA 25392761 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 |||| || || | || || || ||||| || || || ||||||| ||| Sbjct 25392760 CCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAA 25392701 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || || || || || || ||| | || || || || || || || ||| Sbjct 25392700 TTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACC 25392641 Query 49894 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTA 49950 || | || || || | | || | ||| | | || || | | | | || || Sbjct 25392640 GCGTTGGTAATTATTTCTTTTAC--TCTCTGCTC-CGAGGGCTTGTGTACCAGGTGCTTG 25392584 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||||| || || || || |||||||||||||| ||||| ||||| ||||| |||||| Sbjct 25392583 AACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAA 25392524 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| || || || || || ||||| ||||| || ||||| || ||| Sbjct 25392523 AATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCA 25392464 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC-- 50128 |||||||||||||||||||| || || ||||| |||| || |||||||| | || Sbjct 25392463 GAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCT 25392404 Query 50129 -TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| ||||| ||||| || |||||||| || ||||||||||| || || Sbjct 25392403 TTGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCA 25392344 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 ||||| || |||||||| | | |||| || |||||||| ||||| || || | ||| Sbjct 25392343 ATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGA 25392284 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || |||||||| || || ||||| || ||||| || || || || |||||||| | ||| Sbjct 25392283 CTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCC 25392224 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || || | || |||||| | |||||| || | || || ||||| ||||| || ||| Sbjct 25392223 TCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCA 25392164 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 || || ||||| || |||| ||||| |||||||||| | || | ||| | || Sbjct 25392163 CTCGCCGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCT 25392104 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | | ||||| || || | || || || || | |||||||| || ||||| Sbjct 25392103 TCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCA 25392044 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 50532 || || || ||||| | |||||| ||||| |||| || ||||||| Sbjct 25392043 GCTTTCTTGTACATCTGCCAGATATCATGGTATTCGA-TGGGAAA 25392000 >seq117 Length=147991367 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || ||||||||||||||||||||||| || || |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 >seq1 Length=282763074 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||||||||| || || ||||| || || | | |||| Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | |||||| Sbjct 167557694 CTGTTTCTTATACCGTA 167557678 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 167542545 CACTGAACACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACAGCGATCCTTGCTGCCAGGA 167542486 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| || || || | ||||| | ||||| ||| | || || ||||| ||||||| Sbjct 167542485 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCAGCTGTCTCAGCAGCCAGGGTGTCCA 167542426 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 167542425 GTTCCACTGTGGTGACCCCACTGTATAGGCCTTGGATTACTTTCAT 167542380 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || |||||||| | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || ||||| ||||| |||||||| || ||||| ||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 Score = 89.7 bits (98), Expect = 7e-13 Identities = 224/334 (67%), Gaps = 11/334 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 ||| || || || || ||| ||||| |||| || || |||| || | ||| || ||| Sbjct 48565169 TCCCGTGGAGCCGAAGCCTCCTGAGC--CTCTCTCAGTGTTATCCAGTGTTTGCACCTCC 48565226 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | ||||||||| || || | | || ||||| || || | || || | || Sbjct 48565227 TCTAAGTCTGGATAAAGAATCCGCTCCCAAATGAGCTGCGCGATCCGGTCACCTTTTTTC 48565286 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | |||| | ||||||| ||| | || | ||| || | ||||| ||||||||| Sbjct 48565287 ACCTCGAACTTCTCTTTTCCAAAATTGAACAGCACGACGCCGACATTTCCTCTATAATCT 48565346 Query 47881 TCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGA 47937 |||||||| ||||| |||||| ||| || | |||| | || ||||| | ||| Sbjct 48565347 TCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACAGCCAAGCCAGAACGTGGA 48565406 Query 47938 GCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGT 47997 || | ||| || ||||| ||| | | || ||| |||||||| | | | Sbjct 48565407 GCCACTCTTCCGTAGCACCCAGAAGGAACAGCTATCTGAATGTCTGTCTTCA--CAAGGG 48565464 Query 47998 CTTTCTCC-TGGA-GGGATAGTATAATCGTAAGC 48029 |||||||| |||| || || |||||||| || || Sbjct 48565465 CTTTCTCCATGGATGGAATTGTATAATCATAGGC 48565498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260225666200