Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq297 289 3e-73 seq129 84.2 2e-11 >seq297 Length=62275575 Score = 289 bits (320), Expect = 3e-73 Identities = 607/898 (68%), Gaps = 10/898 (1%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | || || || | |||| || ||||||||||| ||||| Sbjct 25392883 TTTGACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTT 25392824 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCA 13682 ||||| ||||| ||||| ||||| || |||||||||||| | | || | || | | Sbjct 25392823 CCTTCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTA 25392764 Query 13683 CAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13742 |||| || || | | | || || || | |||||| || || || ||| || Sbjct 25392763 AAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTG 25392704 Query 13743 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 |||||||| || || || || ||||| | | || | || || | ||||| Sbjct 25392703 CAATTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTG 25392644 Query 13803 ACAGCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTT 13860 || || | | || || || | || |||| | || || | | || || | Sbjct 25392643 ACCGCGTTGGTAATTAT--TTCTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCT 25392586 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 | || || | || ||||| ||||| || || ||||||||||| ||||||||||| || | Sbjct 25392585 TGAACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGG 25392526 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 ||||||| | || ||||||| ||| ||||| || | ||| ||||||| ||||| || | Sbjct 25392525 AAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAAC 25392466 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | |||||||| ||||| || || ||||| || || | | |||||||||| ||| || | Sbjct 25392465 CAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCT 25392406 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 14100 ||||| | ||||| ||||| |||| || || || | | || |||||| | Sbjct 25392405 CTTTGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCT 25392346 Query 14101 CAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 14160 |||| || || || | |||||| | ||||| | | | |||||| || |||||||| | Sbjct 25392345 CAATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 25392286 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 || |||||||| ||||||||||| ||||| || || || || ||||| || || | | Sbjct 25392285 GACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGG 25392226 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 | || | ||| ||||| | ||||| || |||| || ||||| ||||| |||| Sbjct 25392225 CCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCAT 25392166 Query 14281 CACTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||| || ||||| || ||| || ||| | ||||| | | ||| || || || Sbjct 25392165 CACTCGCCGCAAAGAAGGCCAGAACATGAGAT--ATAAAATGTCTCTCATCTGGTTTCAG 25392108 Query 14339 TTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14397 || ||| | | || | |||||| ||||| || || || || | |||||||| | Sbjct 25392107 AGCTTCCCAGTGCTGA-ATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGG 25392049 Query 14398 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | ||||||| || ||||| ||| || || | ||| || ||||| || || || Sbjct 25392048 CCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGAA 25391991 >seq129 Length=145729302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||| |||||||| || | || ||||| | |||| || ||| Sbjct 76759206 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTT 76759265 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||| ||||||||||| || || ||||| || || || || ||||| || || Sbjct 76759266 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722273247000