Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq297 266 3e-66 >seq297 Length=62275575 Score = 266 bits (294), Expect = 3e-66 Identities = 603/899 (67%), Gaps = 12/899 (1%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || || || ||||| | || || || | |||| || ||||| ||||| ||||| Sbjct 25392883 TTTGACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTT 25392824 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCA 13470 ||||| ||||| ||||| ||||| || || ||||||||| | | || | || | | Sbjct 25392823 CCTTCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTA 25392764 Query 13471 CAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCA 13530 |||| || || | | | || || || | |||||| || || || ||| || Sbjct 25392763 AAACCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTG 25392704 Query 13531 CAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590 |||||||| || || || || ||||| | | || | || || | ||||| Sbjct 25392703 CAATTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTG 25392644 Query 13591 ACAGCCTCGTTTATAATAATCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTT 13648 || || | | | || || |||| || | || | || || | | || || | Sbjct 25392643 ACCGCGTTGGTAATTATT-TCTTT-TACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCT 25392586 Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708 | || || | || ||||| ||||| || || ||||||||||| ||||||||||| || | Sbjct 25392585 TGAACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGG 25392526 Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768 ||||||| | || ||||||| ||| ||||| || | ||| ||||||| || || || | Sbjct 25392525 AAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAAC 25392466 Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT 13828 | |||||||| ||||| || || ||||| || || | | |||||||||| ||| || | Sbjct 25392465 CAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCT 25392406 Query 13829 TTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTT 13888 ||||| ||||| ||||| |||| || || || | | || |||||| | Sbjct 25392405 CTTTGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCT 25392346 Query 13889 CGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTA 13948 | || || ||||| | || ||| | ||||| | | | |||||| || |||||||| | Sbjct 25392345 CAATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGA 25392286 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 || |||||||| ||||||||||| || || || || || || ||||| ||||| | | Sbjct 25392285 GACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGG 25392226 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 | |||| ||| || || | ||||| || ||||||| ||||| || || |||| Sbjct 25392225 CCTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCAT 25392166 Query 14069 CACTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14126 |||| || ||||| || ||| || ||| | ||||| | | ||| || || || Sbjct 25392165 CACTCGCCGCAAAGAAGGCCAGAACATGAGAT--ATAAAATGTCTCTCATCTGGTTTCAG 25392108 Query 14127 TTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 || ||| | ||| | |||||| ||||| || || || || | |||||||| Sbjct 25392107 AGCTTCCCAGT--GCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAG 25392050 Query 14185 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || ||||||| || ||||| ||| || || | ||| || ||||| || || || Sbjct 25392049 GCCTCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGAA 25391991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478583086846200