Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq97 98.7 8e-16 >seq97 Length=173707219 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| ||||| | ||| | ||||| |||| ||||||||| | ||||| || | Sbjct 138628756 CGCCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 138628815 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| ||||| | || ||||| || || || ||||| ||||| | ||| ||||| | | Sbjct 138628816 ACAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAG 138628875 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||||| || || |||| | || || | | | ||||| | || | Sbjct 138628876 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 138628935 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || || || || || || || ||||||||||| ||||| Sbjct 138628936 CCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381365161215390