Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq232 527 8e-145 seq297 410 2e-109 seq117 120 4e-22 seq1 120 4e-22 seq129 102 1e-16 >seq232 Length=115493446 Score = 527 bits (584), Expect = 8e-145 Identities = 1474/2251 (65%), Gaps = 55/2251 (2%) Strand=Plus/Minus Query 70786 TTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTAC 70845 |||| ||||| || || || || || ||| |||| | | || | || ||| ||| Sbjct 76911780 TTTTTCTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATAC 76911721 Query 70846 ATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAG 70905 || | || |||| ||| | |||| || ||||| |||||||| ||||||||| ||| Sbjct 76911720 ATCCGAGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAG 76911661 Query 70906 CTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCT 70965 | || || || || || || || | ||||| ||||||| || ||| | || || || Sbjct 76911660 TTGGGCTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCA 76911601 Query 70966 GCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTA 71025 || ||||| || | | ||||| || | |||||||| || || ||| | | | |||| Sbjct 76911600 GCTGCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTC 76911541 Query 71026 ATATCTTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCAATAATCCTATTT 71082 | | || |||| | || || |||||||||| ||| ||| | ||| |||| Sbjct 76911540 AGGTTATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTT 76911481 Query 71083 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACT 71142 || |||||||||||||| || ||| || | | || | || | ||||||| || Sbjct 76911480 TTCATCTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACA 76911421 Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 | ||||||||||| ||||| ||||| | |||||| || ||||||| || | || | Sbjct 76911420 ATCTGAAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATG 76911361 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||| |||||| | || ||| ||||||||| | ||||| ||||| || || | | || | Sbjct 76911360 GACTGATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAA 76911301 Query 71263 CTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCC 71322 || ||||| | ||| | | || || | || ||| | ||| | ||| || || Sbjct 76911300 CTGTTTCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCT 76911241 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCA 71382 | || | ||| || || || || | ||||| || Sbjct 76911240 GTAGGAATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCA 76911181 Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 || || | || || || | || | |||||| ||||| || || || | ||||||||| Sbjct 76911180 TACGTTTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAA 76911121 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 ||||||||||| || || | |||||| | || ||||| ||||| ||| Sbjct 76911120 TAAATGGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA--------- 76911070 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTC 71562 | || || || ||||||| ||||| || ||||| || || || | || Sbjct 76911069 -------GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGT 76911017 Query 71563 TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||||| || | | || ||||||||||| || || || ||||| || |||||||| || Sbjct 76911016 TTATTTGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGA 76910957 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTATT 71682 ||| ||| || ||||| || || ||||| ||| ||| | | ||| | Sbjct 76910956 TTTTGGACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGT 76910897 Query 71683 ---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 || ||| ||| | || | ||| |||| ||||||| || ||||||| || | Sbjct 76910896 GTGACCTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTG 76910837 Query 71740 G--CATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 | || | | ||| || || || || | || || ||||||||||| | || |||| Sbjct 76910836 GTGCA-ACTCTATC---TCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTT 76910781 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 | | ||||| || ||| || || || || || | || ||||| || || || Sbjct 76910780 GGCTGCTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCT 76910721 Query 71858 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 |||| | || || || | ||| | | || || | ||| | || | | | | Sbjct 76910720 GAGACCCAATGATGGCGTACCAAAGCTGCT-GAACTTTTCACAACTTTTCAGA-CACGAC 76910663 Query 71917 TCT-CTT-TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 || ||| ||||| | |||||| |||||||| |||||| || | | ||| | | Sbjct 76910662 CCTGCTTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGAC 76910603 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 ||||||| ||||| |||||||||| ||||| || | | | |||||| ||||| | Sbjct 76910602 CAGGACACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGA 76910543 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 |||||| || |||| ||| || | || ||||| | | | || || || || |||| Sbjct 76910542 AGAGATTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTG 76910483 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGTTCCAAG 72147 | ||||| || | || |||||| | | || || || ||||| || | || | Sbjct 76910482 TGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGG 76910423 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || || || | | ||||| || |||||||| || ||||| | ||| | ||| ||||| Sbjct 76910422 TAAATAGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTG 76910364 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 |||| ||||||| | ||| | || || ||| || | || ||||| | || ||| Sbjct 76910363 TTATGTACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAG 76910304 Query 72268 CTTCCACTGGCACGAATATTGCTAATTGAT---AGACCTATTCCCCCTGCCATTTTAGAG 72324 || ||| |||| |||||| |||| | | || |||||||| || ||||| Sbjct 76910303 CTACCAATGGCCCGAATAC----AATTCACGCAACACTGATTCCCCCAGCAGACTTAGAA 76910248 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || || | | | || | |||||||| || ||||| || || ||| | |||| | Sbjct 76910247 ATCAAGGAATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTC 76910188 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 | || ||||||| ||||| || | | | | || || ||||| || | | ||||| Sbjct 76910187 AAGAGGAAACAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGAGAG 76910129 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 72504 || || ||||| || || ||||| ||||||||||| || ||||| || | || ||||| Sbjct 76910128 GCTTGAGTAAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCT 76910069 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 || || || || || | || | ||| ||||||||||| |||| |||| | | || Sbjct 76910068 TCTTTGTGAATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTT 76910009 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 72624 | | || |||||||| || || ||||| || ||||||||||| |||||||| Sbjct 76910008 CCACTGATCTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACG 76909949 Query 72625 AAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCC 72684 || | | || || ||||| | ||||| || | ||| |||| |||| || || Sbjct 76909948 AAATTCCAGTCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATGTCA 76909889 Query 72685 A-TGGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 72743 | || ||| ||| | | || ||||||| | | | || | ||||| | |||||| | Sbjct 76909888 AGTGCTGA-ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTA 76909830 Query 72744 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 72803 | |||||||||| | || | || | ||| |||||||| ||||| | || || || || Sbjct 76909829 GAGATCCTCCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGC 76909770 Query 72804 TATTCTGGCGGCTAGAATGGCATAATCTGGATG--TTGTGTAGTA--CAAGTGGCTGCTA 72859 || || || || || |||||||| || || || | | | ||| || ||||| ||| Sbjct 76909769 GATCCTTGCTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTG 76909710 Query 72860 TTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAA 72919 | || || ||||| ||||||| ||| || || || || ||| | | || |||||| | | Sbjct 76909709 TCTCAGCAGCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTA 76909650 Query 72920 CCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTC 72979 | ||||| | || | | |||| | | | || | || | |||||||| | ||| Sbjct 76909649 CTTTCATGGTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCT 76909590 Query 72980 TAATACGAGACGTGATTTTATCAAACATAAC 73010 || || || || ||||| ||||||||||| Sbjct 76909589 GGATTCGTGATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 410 bits (454), Expect = 2e-109 Identities = 651/927 (70%), Gaps = 11/927 (1%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCT--TGAGACATAACTCCCATTTT 41775 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 25392923 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 25392864 Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||||| || || || || || || || || || || |||||||| | ||| ||||| || Sbjct 25392863 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 25392804 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 |||||| ||||| ||||| || || |||| || ||||| |||| || || | Sbjct 25392803 CATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 25392744 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 || || || | || || || || ||||||| |||||||| || || || || Sbjct 25392743 CCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTT 25392684 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 || || || ||| | || || || || || || || |||||||| || || || Sbjct 25392683 CACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATTTC 25392624 Query 42016 TCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAA 42073 | ||||| | | || || || ||| | || || ||||||| || || || Sbjct 25392623 TTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGG--TGCTTGAACATCAGGCAGGCAAAG 25392566 Query 42074 TCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 42133 || |||||||||||||||||||| ||||| | ||| |||||||| || || || ||||| Sbjct 25392565 TCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCATC 25392506 Query 42134 AGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCT 42193 || || || || || ||||| ||||| || ||||| || ||||||||||||||||||||| Sbjct 25392505 AGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCT 25392446 Query 42194 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTT 42250 || || || ||||| | || || |||||||| | | | |||| ||||| Sbjct 25392445 ACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAACGC 25392386 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || |||||||| || ||||||||||| || || ||||| || |||||||| Sbjct 25392385 AAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATAT 25392326 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | | |||| || |||||||| || || || || | ||||| |||||||| || || Sbjct 25392325 TCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTGT 25392266 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || ||||| || || || || |||||||| | |||||| || || || |||||| Sbjct 25392265 ATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCT 25392206 Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 | |||||| || | || || || || ||||| || ||||| || ||||| || ||| Sbjct 25392205 TGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGAAGGCC 25392146 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCT 42550 | ||||| |||||||| | | || || ||| | | | ||| | | ||||| Sbjct 25392145 AGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGAATATCC 25392086 Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | || || || || | |||||||| || || || || || || ||||| | | Sbjct 25392085 TTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGC 25392026 Query 42611 CAGATATCATGATATTGAATTGGGAAA 42637 ||||||||||| |||| | ||||||| Sbjct 25392025 CAGATATCATGGTATTCGA-TGGGAAA 25392000 >seq117 Length=147991367 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || ||||||||||||||||||||||| || || |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 >seq1 Length=282763074 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 71263 CTATTTCTAAGACC 71276 || ||||| | ||| Sbjct 167557694 CTGTTTCTTATACC 167557681 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 167542545 CACTGAACACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACAGCGATCCTTGCTGCCAGGA 167542486 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | ||||| | ||||| ||| | || || ||||| ||||||| Sbjct 167542485 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCAGCTGTCTCAGCAGCCAGGGTGTCCA 167542426 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 167542425 GTTCCACTGTGGTGACCCCACTGTATAGGCCTTGGATTACTTTCAT 167542380 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 ||||| |||| || ||||| || || | | | |||||| ||||| || || || | Sbjct 167554676 GATCCCTCATACGTTTCGTAGGGGCCATACTCCTTGGCTAGGTCACAGCTGGCTTCCAGG 167554617 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 ||||||||||| |||||||| || || | |||||| || || ||||| ||||| ||| Sbjct 167554616 GCTCCATAATAGATGGTTTCAAAGATTTGCTTATTTAGTAGCTGGGCTTCTGGGCTCTCA 167554557 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || || || || ||||||| ||||| || ||||| || || || Sbjct 167554556 AAGGGATACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGC 167554497 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 167554496 CGATGGCGTTTATTTGA 167554480 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| | || || || || || || | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||||||||| || || || || || ||||| || | | |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || ||||| ||||| |||||||| || ||||| ||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || ||||| || | || ||||| || || || || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 >seq129 Length=145729302 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || ||||| || || || ||||| ||||| | ||| || Sbjct 76759206 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTT 76759265 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| |||||||||||||| ||||| || |||||||| || || ||||| Sbjct 76759266 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131188275800