Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq297 262 6e-65 >seq297 Length=62275575 Score = 262 bits (290), Expect = 6e-65 Identities = 591/881 (67%), Gaps = 28/881 (3%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||||||| || ||||| || ||| | |||||||| || ||| |||||||||||||| Sbjct 25392000 TTTCCCATCGAATACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGG 25392059 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | ||| ||||| || || |||||||| | | | ||||| ||| |||| Sbjct 25392060 ACTGCCGAGGAGGTGGACCTTTCCAAGGATATTCAGCACTGGGAAGCTC-------TGAA 25392112 Query 125118 AC----TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || |||| || | |||||||| || || ||||||||||||| | ||||| || Sbjct 25392113 ACCAGATGAGAGACATTTTATATCTCATGTTCTGGCCTTCTTTGCGGCGAGTGATGGCAT 25392172 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTC-CAGAGGTGTCG 125231 ||||| || || || || ||||| ||||| ||| | | || |||||| Sbjct 25392173 AGTCAATGAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCA--AGTCACAGAGGCCCGC 25392230 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || || || |||||||| || |||||| | ||||| ||||||||| | || Sbjct 25392231 TGTTTCTATGGCTTCCAAATTGCCATGGAGAACATACACTCCGAAATGTACAGTCTCCTT 25392290 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACAC 125350 ||||||| |||||| ||| | ||| | || || ||||| ||||| || || || Sbjct 25392291 ATTGACACTTACATTAAAGATTC-CAAAGAAAGAGAATATCTCTTCAACGCCATTGAGAC 25392349 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 |||| | | | || |||||| | |||| | || ||||| | ||| | || | Sbjct 25392350 AATGCCTTGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGTTGGATTGGGGACAAAGAGGC 25392409 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | |||| | || || | ||||| ||||| || ||||| || ||||||||||| ||| Sbjct 25392410 TACGTATGGAGAACGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTC 25392469 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 |||||| | || || ||||||||||| || ||||| ||||| || || || || Sbjct 25392470 TTTTGCATCAATATTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAA 25392529 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAA 125590 || |||| |||| ||||| || ||||||||||||||| || |||| ||| Sbjct 25392530 TGAACTTATTAGCAGAGATGAGGGTCTGCACTGTGACTTTGCCTGCCTGATGTT---CAA 25392586 Query 125591 CTATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 | ||| | | || | | ||| || ||||| | || | ||| | | Sbjct 25392587 GCACCTGGTACACAAGCCCTCGGAGCAGAGAGTAAAAG-------AAATAATTACCAACG 25392639 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 | || |||||||| || ||||| || || || |||| || || | | || || |||| Sbjct 25392640 CGGTCAGGATAGAGCAGGAGTTCCTCACAGAGGCCCTGCCTGTGAAGCTCATCGGGATGA 25392699 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 | |||| | ||| ||||||| ||||||||||| || | || || ||| || Sbjct 25392700 ATTGCACCTTGATGAAGCAGTACATCGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGG 25392759 Query 125770 TTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 | |||||||| ||| | | ||||| ||||| |||||| | || ||||||| Sbjct 25392760 GTTTTAACAAGATTTTCAAAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTAG 25392819 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || || ||||| || |||||| || |||||||| Sbjct 25392820 AAGGAAAAACAAACTTCTTTGAGAAGCGAGTAGGCGAGTAC 25392860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050353605800