Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 141 8e-29 seq219 96.9 3e-15 >seq1 Length=282763074 Score = 141 bits (156), Expect = 8e-29 Identities = 204/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| ||||| || |||| |||||| || || | ||||| |||||| || Sbjct 48565170 CCCGTGGAGCCGAAGCCTCCTGAGCCTCTCTCAGTGTTATCCAGTGTTTGCACCTCCTCT 48565229 Query 5564 ACATCGGGG-AACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTAC 5622 | || || || | | | ||||| || || |||||||| || ||||| || | || || Sbjct 48565230 AAGTCTGGATAAAGAATC-CGCTCCCAAATGAGCTGCGCGATCCGGTCACCTTTTTTCAC 48565288 Query 5623 CTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGC 5682 |||||| | | | || || ||||||||||| ||||| || || || | || || | Sbjct 48565289 CTCGAACTTCTCTTTTCCAAAATTGAACAGCACGACGCCGACATTTCCTCTATAATCTTC 48565348 Query 5683 GTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGC 5742 |||||| || || || || || || ||||||||||| || |||| ||| || || ||||| Sbjct 48565349 GTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACAGCCAAGCCAGAACGTGGAGC 48565408 Query 5743 CACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 ||| | |||||||||||| |||| |||||| | ||| || Sbjct 48565409 CACTCTTCCGTAGCACCCAGAAGGAACAGCTATCTGAATGTCTGT 48565453 >seq219 Length=114033958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||||| |||| || ||||| |||| ||||| | ||| || ||| Sbjct 47740909 GGTTACTTGGGTTGCCAAGCCTTGTCAGAAATGATCAAGTTTTACCTGGTAGAAGTGATG 47740968 Query 127222 CCACAGGCAGAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAG 127281 || |||||||| || || || || || || || || || | ||||||||||| || ||| Sbjct 47740969 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAATTCCCTGGGAGAGAAG 47741028 Query 127282 CTGAAGAC 127289 |||||||| Sbjct 47741029 CTGAAGAC 47741036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 5594 AGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGC 5653 |||||||| || | ||||| | | ||||| || || || || || ||||||| | Sbjct 73234485 AGCTGCGCAATCAGATCGCCTTTTTCCACCTCAAACTCTTTT---CCTAAATTGAACAAC 73234541 Query 5654 ACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAG 5713 || || |||| || |||| || | | |||||| || || || || || || | |||| Sbjct 73234542 ACTGCGACCACATTTCCGCTATAATGGTGGTCTATGACACCGGCTCCTACATCTAGGAAG 73234601 Query 5714 TGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGT 5773 ||||| || |||| ||| || || ||||| || | |||||||||||| |||| | Sbjct 73234602 TGCTTTACAGCCAAGCCAGAACGTGGAGCTACTCTTCCGTAGCACCCAGAAGGAACAGCT 73234661 Query 5774 ATCTGCAGGTCCGT 5787 ||||| | ||| || Sbjct 73234662 ATCTGAATGTCTGT 73234675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430049394569960