Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq166 95.1 8e-15 >seq166 Length=122095297 Score = 95.1 bits (104), Expect = 8e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| ||||||||||| || || || || || ||||| Sbjct 121928285 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTC 121928344 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 ||| || | | | || | || ||| | ||||||||||||| ||| |||||||| | Sbjct 121928345 TCCTTCCTGTCGG-GCAGAGAATCCCAAGCTGTCCAAAAAGTCTCGGGACCCATTGGCAT 121928403 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 121928404 CCCAAATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 121928452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340133641117215