Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_005833.1 Length=48836 Score E Sequences producing significant alignments: (Bits) Value seq572 132 2e-26 seq473 132 2e-26 >seq572 Length=2924 Score = 132 bits (146), Expect = 2e-26 Identities = 139/179 (78%), Gaps = 9/179 (5%) Strand=Plus/Minus Query 941 GACGAAGAAGTTCCGGTGAAGAAGCGCCGCAGCCGGAAAAAAGTCAGCCTGGCTGATTGT 1000 |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct 2276 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 2217 Query 1001 CTGGATTCGTTTGTTCCTGATGTTGATGATCTTGAGAAAGGCGA---CGTTACT-GTAAG 1056 |||||||||||||| |||||| | | || | | |||| | ||| || | Sbjct 2216 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGA- 2158 Query 1057 CACCGTGCGCGACCTGGTTCGCCAGATGAAAGCGCATATCGAAAAATGTGGACTGTAAG 1115 ||| ||| | |||| |||||||||||||||||||||||| ||||||||||||| Sbjct 2157 ---CGTAAACGAGATCGTTC-CCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAG 2103 >seq473 Length=26706 Score = 132 bits (146), Expect = 2e-26 Identities = 116/143 (81%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 48694 GTTGATGTGATGAATCATACCCAGTAGACATGGATAAGTCGTTAGCAAAAAATGCTATTC 48753 ||||||| ||| |||||| || || ||| ||||||||||||||| |||||||| Sbjct 26115 GTTGATGGCCCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCAAAAA-TGCTATTC 26057 Query 48754 CAATAATTGCTCATTATTCCATCAATACTGGAATATCTGGAATAATCACGATCATGATTG 48813 ||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||| Sbjct 26056 CAATAATTGCTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTTGATTGTTATTG 25997 Query 48814 ATCTCTAATGATGAGATGTGATT 48836 || | |||||||| | |||||| Sbjct 25996 ATTGCGAATGATGAAACGTGATT 25974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156151829120580