Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq97 89.7 4e-13 >seq97 Length=173707219 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| |||||||||||||||||| |||| ||| || | || || Sbjct 138628775 CACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTC 138628834 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||||||| | | || || | ||||||||| || | | |||||| ||| Sbjct 138628835 CAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 138628894 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | |||| || || | | || ||||| || ||||| || Sbjct 138628895 GATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTT 138628954 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || || || || ||||||||||||||||||||| Sbjct 138628955 CCCTGTAAGGGTCTTCACAAAAATCTGCATCGTG 138628988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246297030955