Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq219 183 4e-41 seq55 147 3e-30 >seq219 Length=114033958 Score = 183 bits (202), Expect = 4e-41 Identities = 218/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8680 GAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACT 8739 ||| | ||| || ||||||||||| || || | |||| |||||||| || | ||| | Sbjct 67356803 GAAAGAGGCAAAGGGACACCCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGT 67356744 Query 8740 CTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGA 8799 |||| ||||| ||| ||||| ||||| ||||||||||| ||||||||||| || || Sbjct 67356743 GTTGATGATCCTAAAACCCACTTCTCCTCCGAAGGTGCTAGGTTTCCAGTATTGAGGAGA 67356684 Query 8800 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCT 8859 |||||| || |||| |||||||| | ||| || ||||| || || || | ||| | Sbjct 67356683 ACAGATGGGATTACCCATAAGGCCTTTCAAGGAGAATGGAGCTCCAAGTTCTACCATGGT 67356624 Query 8860 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCAC 8919 ||| || ||||| || | ||||| ||||||||||||| | ||| |||| |||| Sbjct 67356623 CTCCCCAAAGATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCGGGATACAGTTCCAT 67356564 Query 8920 AGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||| ||||| | | || ||||| ||||| || ||||||| Sbjct 67356563 GGCATCGATGTCATGGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCTG 67356508 Score = 159 bits (176), Expect = 5e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 |||| || |||||| | |||||| ||| || ||||| || |||| || | ||| |||| Sbjct 67355244 TGGTTTGGAACAGTCGCTCGTCATCCCACTCAGGATGCTCCTGTTTGAGTATATCACACA 67355185 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 |||||||||| |||| |||||||| ||||| |||||||| ||||| |||||||| |||| Sbjct 67355184 CTCTGTTGTGCTCCCGAAGCCAGATGGTAGCATACATCATCAGACCCGGCACCAGACCAA 67355125 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | | || || || ||||| | |||| | || || || | |||||| |||||||||| Sbjct 67355124 AGACTTCCTGCCCCACAGCGAACCGCAGGTGCTCAGGGACGTGGGGAGGGTAGATCATGT 67355065 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 ||||| |||||||| | ||| ||||||| Sbjct 67355064 CTACCTGAGTGTCTTTGACTGTGGGAGGATACA 67355032 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | || || ||||| || ||| | | Sbjct 67353163 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCCACAGGAGGAAGGGCCCTGGTG 67353104 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || |||||||| ||||||||||||||||| ||| ||| |||||| | | ||||| | Sbjct 67353103 TAGTAGGAGAGGTTGGAGAAAGCTTCCCAACTTTTGTAACCGTAGTGCACATTGTAAGTT 67353044 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 67353043 GGTGGGCTGTCAATCAAATGTGATCTGGCTGAA 67353011 >seq55 Length=177699992 Score = 147 bits (162), Expect = 3e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| ||||||||||||||||| | ||||| |||||| ||| Sbjct 15581284 AAACCCACATCACCACCGAATGTGCTGGGTTTCCAGTACTCTGGGGAACAGATGGGATTC 15581225 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| |||||||| || |||||||||| ||| | |||||||| || |||| | Sbjct 15581224 CCTAGGAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCTATCATGCTCTCCCCAAAGAGG 15581165 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || ||| |||| || | || | ||| ||||| | ||| |||||||| Sbjct 15581164 GAGTTGGGCTGGCACTTCTCCAGCATCAGCCCCGGGTAGAACTCTAAAGCATCGATGTCA 15581105 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || || || || | || || || || ||||| |||||||| Sbjct 15581104 CCATATAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCTGT 15581061 Score = 89.7 bits (98), Expect = 7e-13 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| ||||||||||| || || || |||||| |||| ||||| Sbjct 15572501 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCATGTAGGATGC 15572442 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||| | || ||||| | ||| || || | |||||||| || | | | | | Sbjct 15572441 TCCTCCTTCAGCAAGTCACACACACGGTTATGCTCGCGCAGCCAGATCGTGGAGAAGAGC 15572382 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || ||||| || | || ||||| |||| || || ||||||| || ||||||||| Sbjct 15572381 ATCAGACCCGGGAGCAACCCAAACACCTCCTGGCCCACAGCCATCTGC---TTTTCGGGC 15572325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708516341985200