Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq232 560 1e-154 seq297 423 2e-113 seq1 131 2e-25 seq117 120 4e-22 seq129 102 1e-16 >seq232 Length=115493446 Score = 560 bits (620), Expect = 1e-154 Identities = 1477/2243 (66%), Gaps = 49/2243 (2%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 ||||| || ||||| || || ||| |||||| | || | || ||| ||||| | Sbjct 76911775 CTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATACATCCG 76911716 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 || |||| ||| | |||| || ||||| |||||||| ||||||||| || | || Sbjct 76911715 AGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAGTTGGG 76911656 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 || || |||||||| || | ||| || ||||||| || ||| | || || || || || Sbjct 76911655 CTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCAGCTGC 76911596 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 62224 ||| || | | ||||| || | |||||||| || || ||| | | | |||| | | Sbjct 76911595 CATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTCAGGTT 76911536 Query 62225 TTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 || |||| | || || |||||||||| ||| || | ||| ||| || || Sbjct 76911535 ATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTTTTCAT 76911476 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||| |||||||| || ||| || | | || | || | | ||||| || | || Sbjct 76911475 CTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACAATCTG 76911416 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 ||||||||| ||||| ||||| | |||||| || ||||||| || | || | |||| Sbjct 76911415 AAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATGGACTG 76911356 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 |||||| | || ||| ||||||||| | ||||| ||||| || || | | |||||| || Sbjct 76911355 ATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAACTGTT 76911296 Query 62462 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62521 ||| | |||||| || || || | || ||| | | ||| | ||| || || | || Sbjct 76911295 TCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCTGTAGG 76911236 Query 62522 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 62581 | ||| || |||||||| || ||| | ||||| |||| || Sbjct 76911235 AATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCATACGT 76911176 Query 62582 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 62641 | || || || | | || ||||| ||||| || || || | || || |||||||| Sbjct 76911175 TTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAATAAAT 76911116 Query 62642 GGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAA 62701 |||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 76911115 GGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA-------------- 76911070 Query 62702 GAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62761 | || || || || |||| ||||| || ||||| || || || | ||| ||||| Sbjct 76911069 --GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGTTTATT 76911012 Query 62762 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62821 || | | || ||||||||||| || || || ||||| || |||||||| ||||| Sbjct 76911011 TGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGATTTTG 76910952 Query 62822 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT---AC 62878 |||||| ||||| || || |||||| ||| ||| | ||| | || Sbjct 76910951 GACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGTGTGAC 76910892 Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG--CA 62936 ||||||| | || | ||| |||| ||||||| || ||||||| || | || Sbjct 76910891 CTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTGGTGCA 76910832 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 | |||||| || || || | || || ||||| ||||| | || ||||| | Sbjct 76910831 ACTC----TATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTTGGCTG 76910776 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 ||||| || ||| || || || || ||| |||| ||||| || || |||||| Sbjct 76910775 CTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCTGAGAC 76910716 Query 63057 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT-C 63114 | || || || | ||| | | || || | ||| | | ||| | | || | Sbjct 76910715 CCAATGATGGCGTACCAAAGCTGCT-GAACTTTTCACA-ACTTTTCAGACACGACCCTGC 76910658 Query 63115 TT-TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 || ||||| | ||| || |||||||| |||||| |||| | ||||| |||||| Sbjct 76910657 TTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGACCAGGA 76910598 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 || |||| |||||||||| |||| || || | || ||||| ||||| |||||| Sbjct 76910597 CACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGAAGAGA 76910538 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 | || |||| ||| || | || ||||| | | | ||||| || || ||||| ||| Sbjct 76910537 TTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTGTGTTC 76910478 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGTTCCAAGTATAT 63346 || || | || |||||| | | || || || ||||| || | || ||| || Sbjct 76910477 TTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGGTAAAT 76910418 Query 63347 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63406 || | | || || || |||||||| || ||||| | ||| | ||| ||||| |||| Sbjct 76910417 AGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTGTTATG 76910359 Query 63407 AACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCC 63466 ||||||| | ||| | || || || || | | || || || | || ||||| || Sbjct 76910358 TACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAGCTACC 76910299 Query 63467 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63526 | |||| |||||| | | | | | || |||||||| || ||||| || || | Sbjct 76910298 AATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTAGAAATCAAGGA 76910240 Query 63527 GCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAA 63586 | | || | || ||||| || ||||| ||||| ||| | |||| | | || || Sbjct 76910239 ATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTCAAGAGGAA 76910180 Query 63587 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 63646 ||||| ||||| || | | | | || || ||||| || | | ||||| || || || Sbjct 76910179 ACAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGAGAGGCTTGAGT 76910121 Query 63647 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63706 ||| || || ||||||||||||||||| || ||||| || | || ||||| || || Sbjct 76910120 AAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTG 76910061 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 ||| || || | || | ||| ||||| ||||| |||| |||| | | || | || Sbjct 76910060 AATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTTCCACTGAT 76910001 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 |||||||| || || ||||| || ||||||||||| |||||||| || | | Sbjct 76910000 CTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACGAAATTCCA 76909941 Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCA-TGGTGA 63885 || || ||||| | || || || | ||| |||| |||| || || | || ||| Sbjct 76909940 GTCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATGTCAAGTGCTGA 76909881 Query 63886 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 63945 ||| | | || ||||||| | | | || | ||||| | |||||| | | ||||| Sbjct 76909880 -ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTAGAGATCCT 76909822 Query 63946 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 64005 ||||| | || | || | ||| |||||||| ||||| | || || || || || || | Sbjct 76909821 CCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTTG 76909762 Query 64006 CGGCTAGAATGGCATAATCCGGATG--TTGTGTAGTA--CAAGTGGCTGCTATTTCGGCT 64061 | || || |||||||| || || || | | | ||| || ||||| ||| | || || Sbjct 76909761 CTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTGTCTCAGCA 76909702 Query 64062 GCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATA 64121 ||||| ||||||| ||| || || || || ||| | | || ||||| | || ||||| Sbjct 76909701 GCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTACTTTCATG 76909642 Query 64122 GCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACGA 64181 | || | | |||| | | | ||| | || | |||||||| | ||| || || Sbjct 76909641 GTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCTGGATTCGT 76909582 Query 64182 GACGTGATTTTATCAAACATGAC 64204 || || ||||| |||||||| || Sbjct 76909581 GATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 423 bits (468), Expect = 2e-113 Identities = 655/928 (71%), Gaps = 13/928 (1%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 25392923 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 25392864 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||||| || || || || || || || || || ||||||||||| | ||| ||||| || Sbjct 25392863 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 25392804 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||| ||||| ||||| || || |||| || ||||| |||| || || | Sbjct 25392803 CATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAG 25392744 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 || || || || || || || || ||||||| |||||||| || || || || Sbjct 25392743 CCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTT 25392684 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 || || || ||| | || || || || || || || ||||| | || || || Sbjct 25392683 CACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATTTC 25392624 Query 33255 TCTAACGGTTTCTTCACTCGGTGGAT---GCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | || | ||| | | || || | | | | || || ||||||| || || || Sbjct 25392623 TTTTAC--TCTCTGCTC-CGAGGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAA 25392567 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 || |||||||||||||| ||||| ||||| ||||| |||||||| || || || ||||| Sbjct 25392566 GTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCAT 25392507 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 || || || || || ||||| ||||| || || || || |||||||||||||||||||| Sbjct 25392506 CAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTC 25392447 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTT 33488 ||| ||||| ||||| | || || |||||||| | | | |||| ||||| Sbjct 25392446 TACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAACG 25392387 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||| || |||||||| || ||||||||||| || || ||||| || |||||||| Sbjct 25392386 CAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATA 25392327 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | | |||| || |||||||| ||||| || || | ||||| |||||||| || || Sbjct 25392326 TTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTG 25392267 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||||| || ||||| || || || || |||||||| | ||||| || | || ||||| Sbjct 25392266 TATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTC 25392207 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | |||||| ||| |||| || ||||| ||||| || ||||| || ||||| || || Sbjct 25392206 TTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGAAGGC 25392147 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33788 || ||||| |||||||| | | || |||||| | || | ||| | | ||||| Sbjct 25392146 CAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGAATATC 25392087 Query 33789 TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTT 33848 || || | || || || || | |||||||| || ||||| || || || ||||| | Sbjct 25392086 CTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTG 25392027 Query 33849 CCAGATGTCATAATATTGGATTGGGAAA 33876 |||||| |||| |||| || ||||||| Sbjct 25392026 CCAGATATCATGGTATTCGA-TGGGAAA 25392000 >seq1 Length=282763074 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | |||||| Sbjct 167557694 CTGTTTCTTATACCGTA 167557678 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | || ||||| ||||| |||||||| || ||||||||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 63732 ATGTGCTGAGGTCTTTCA 63749 |||||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 167542545 CACTGAACACTTTCTTTGTTTCCTTGTGCAAGTTAGAGACAGCGATCCTTGCTGCCAGGA 167542486 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || || || | ||||| | ||||| ||| | || || ||||| ||||||| Sbjct 167542485 TGGCATAGTCAGGGTGCTTCGTAGTCAAGGTGGCAGCTGTCTCAGCAGCCAGGGTGTCCA 167542426 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 167542425 GTTCCACTGTGGTGACCCCACTGTATAGGCCTTGGATTACTTTCAT 167542380 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 >seq117 Length=147991367 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||||||||||||||||||||| ||||| |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCT-TCT--TGAGACATAACTCCCATTTT 33014 ||| |||||| |||| || | ||| ||| ||| || | ||||| |||||||| | Sbjct 43889515 TTAGAAGTCAGCATCCAAGGTGAAAGAATTTTCTGTCGAATTTGACATTACTCCCATCCT 43889456 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||||| || || || || || || || || || ||||||||||| | ||| ||||| || Sbjct 43889455 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 43889396 Query 33075 CATGAAATCAAACGGATT 33092 |||||| ||||| ||||| Sbjct 43889395 CATGAAGTCAAATGGATT 43889378 >seq129 Length=145729302 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || ||||| || ||||| || || || ||||| ||||| | ||| || Sbjct 76759206 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTT 76759265 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| ||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 76759266 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939763567800