Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq297 102 2e-16 seq117 96.9 9e-15 seq1 91.5 4e-13 >seq297 Length=62275575 Score = 102 bits (112), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| ||||| || ||||| || ||||| | |||| || | | | | ||| Sbjct 25392363 AAGAAGAAGGCTGACTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACGTATGGAGAA 25392422 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || || | || || |||| ||| ||||| || ||||||||||| | ||| |||| Sbjct 25392423 CGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATA 25392482 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | |||||||| || || ||||| ||||| | |||||| Sbjct 25392483 TTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAACTTATTAGC 25392542 Query 22612 CGAGATGAGGGTCTTCA 22628 ||||||||||||| || Sbjct 25392543 AGAGATGAGGGTCTGCA 25392559 >seq117 Length=147991367 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| || | || || |||| ||| ||||| || ||||||||||| | ||| || Sbjct 43887647 GAACGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 43887706 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | |||||||| || || ||||| |||||| | ||| Sbjct 43887707 ATATTCTGGCTCAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAGCTTATT 43887766 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 43887767 AGCAGAGATGAGG 43887779 >seq1 Length=282763074 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 363830 AGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTC 363889 ||||| |||||| |||||||| || || |||||| || || || |||||||||| Sbjct 167551251 AGCGCCCAGGGGCATTTGCTATTTACCTGGAGCCTTGGCACCTGGACATCTTTGAGTTTC 167551310 Query 363890 TTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCAC 363949 |||| | ||| ||||| || || || ||| ||| || || ||||| |||| ||||| Sbjct 167551311 TTGACTTGAAGAAGAACACAGGCAAGGAAGAACAGCGCGCGCGGGATCTCTTCTTTGCAC 167551370 Query 363950 TTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 | ||| | | || | || |||||||| |||||| Sbjct 167551371 TGTGGATCCCAGATCTCTTCATGAAGCGAGTGGAG 167551405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303337652246810