Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq232 587 1e-162 seq297 430 2e-115 seq1 131 2e-25 seq117 111 2e-19 seq129 98.7 1e-15 >seq232 Length=115493446 Score = 587 bits (650), Expect = 1e-162 Identities = 1483/2243 (66%), Gaps = 49/2243 (2%) Strand=Plus/Minus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||||| || ||||| || || ||| |||||| | || | || ||| ||||| | Sbjct 76911775 CTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATACATCCG 76911716 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 || |||| ||| | |||| || ||||| |||||||| ||||||||| || | || Sbjct 76911715 AGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAGTTGGG 76911656 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 || || |||||||| || | ||| || ||||||| || ||| | || || || || || Sbjct 76911655 CTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAAACGCCTCTCTCAGCTGC 76911596 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATC 62079 ||| || | || ||||| || | |||||||| || || ||| | | | |||| | | Sbjct 76911595 CATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTTACAGAGTTGCTTCAGGTT 76911536 Query 62080 TTCTGGAAGGTTTG-TAT--TCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 || |||| | || || |||||||||| ||| || | ||| ||| || || Sbjct 76911535 ATCAGGAATTTCTGGTAAGCTCTGAATGGAGCCATTGCAGGCAGTGATCTGATTTTTCAT 76911476 Query 62137 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62196 ||| |||||||| || ||| || | | || | || | | ||||| || | || Sbjct 76911475 CTCTTCATTCCACAAACCCTGCTCAGTAAGATCTTTCAGTAAGCGAGGATTCACAATCTG 76911416 Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 ||||||||| ||||| ||||| | |||||| || ||||||| || | || | |||| Sbjct 76911415 AAATTCTCCTGACAAGACTCTGCAAGTGTAGATGCTACTGGTGTAAGCCTCAATGGACTG 76911356 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 |||||| | || ||| ||||||||| | ||||| ||||| || || | | |||||| || Sbjct 76911355 ATTATTCCTCAGAATCTGAGCAGTTAAAGCAGTAGGCATTGGGGCAATAAGTAAACTGTT 76911296 Query 62317 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62376 ||| | |||||| || || || | || ||| | | ||| | ||| || || | || Sbjct 76911295 TCTTATACCGTACTTTGCAATCTTCCCCTTGAGAAGCTTCCAGTCCCACAGGTCTGTAGG 76911236 Query 62377 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGT 62436 | ||| || |||||||| || ||| | ||||| |||| || Sbjct 76911235 AATAACATTCCACATATCATACTGAAGAATACCTTTGCTGACTGGAGATCCCTCATACGT 76911176 Query 62437 ATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAAT 62496 | || || || | | || ||||| ||||| || || || | || || |||||||| Sbjct 76911175 TTTGTCGGGGCCATATTCCTTGGCTAGGTCACAGCTGGCTTCCAGGGCTCCATAATAAAT 76911116 Query 62497 GGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAA 62556 |||||| ||||| | |||||||| || ||||| |||| ||| Sbjct 76911115 GGTTTCAAAGATTTGCTTATTTAATAACTGGGCTTCTGGGCTCTCA-------------- 76911070 Query 62557 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 62616 | || || || ||||||| ||||| || ||||| || || || | ||| ||||| Sbjct 76911069 --GGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGTGTTTATT 76911012 Query 62617 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 62676 || | | || ||||||||||| || || || ||||| || |||||||| ||||| Sbjct 76911011 TGATAAGTGTGCCTCTGGAATAGGGTAGTAGTTTATATCAATTATTTTATTCGGATTTTG 76910952 Query 62677 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT---AC 62733 |||||| ||||| || || |||||| ||| ||| | ||| | || Sbjct 76910951 GACAATGACTTTAGTGACTTCTGCCAGTTTCTCAAAGTCATACGTATGTTCTGGTGTGAC 76910892 Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG--CA 62791 ||||||| | || | ||| |||| ||||||| || ||||||| || | || Sbjct 76910891 CTACATGTTGAGAGCCAGAGAAGCCAAGTTACAAATTGCAACCTCATCTTCACTGGTGCA 76910832 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 | |||||| || || || | || || ||||||||||| | || ||||| | Sbjct 76910831 ACTC----TATCTCCGTACACAGGTGGCTGCATTTGATGGTTCCCAGGTTCTGTTGGCTG 76910776 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||||| || ||| || || || || ||| |||| ||||| || || |||||| Sbjct 76910775 CTCTTCGGGTCACAGAAGTCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGCCTGAGAC 76910716 Query 62912 TCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT-C 62969 | || || || | ||| | | || || | ||| | | ||| | | || | Sbjct 76910715 CCAATGATGGCGTACCAAAGCTGCT-GAACTTTTCACA-ACTTTTCAGACACGACCCTGC 76910658 Query 62970 TT-TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 || ||||| | ||| || |||||||| |||||| |||| | |||||| |||||| Sbjct 76910657 TTCTCGTAACTTTCATATAACTTCTCGAACTCCTCTCCCTAAACCTCGTCCAGACCAGGA 76910598 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 || |||| |||||||||| |||| || || | || ||||| ||||| |||||| Sbjct 76910597 CACTCATTGGGACACATCAGTGACCGGTCCTGGTTAGTCTCTACTCGCTTCATGAAGAGA 76910538 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 | || |||| ||| || | || ||||| | | | ||||| || || ||||| ||| Sbjct 76910537 TTTGGGATCCGAAGTGCGAAGAAGAGATCCCACGCTTGCTGTTCTTCCTTGCCTGTGTTC 76910478 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATC-AGAA------TGCCACGGTTCCAAGTATAT 63201 || || | || |||||| | | || || || ||||| || | || ||| || Sbjct 76910477 TTCTTCAAGTCAAGGAACTCAAAGATGTCTAGGTGGTTGGTGCCAAGGCTTCAGGTAAAT 76910418 Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261 || | | || || || |||||||| || ||||| | ||| | ||| ||||| |||| Sbjct 76910417 AGCAAATGCCCCCGGGCGCTTGTTTCCACCTTGATCCACGTAAC-AGCTGTGTTGTTATG 76910359 Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||||||| | ||| | || || ||| || | | || ||||| | || ||||| || Sbjct 76910358 TACTCTCAGCGTTGACACAAGACAATTAGAATTGCTGTTAGTCCCAGCAATGTAGCTACC 76910299 Query 63322 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | |||| |||||| | | | | | || |||||||| || ||||| || || | Sbjct 76910298 AATGGCCCGAATACAATTCACGCA-ACACTGATTCCCCCAGCAGACTTAGAAATCAAGGA 76910240 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 | | || | |||||||| || ||||| || || ||| | |||| | | || || Sbjct 76910239 ATACTGCTTCAGAGTATCATAAATTCCCTCAATGCTGTCACCTTTCATACTCAAGAGGAA 76910180 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 ||||| ||||| || | | | | || || ||||| || | | ||||| || ||||| Sbjct 76910179 ACAGCGAGACAGCTGTGGGC-AGTGGTCCCAGCATTGAAGAGAATCGGAGAGGCTTGAGT 76910121 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 ||| || || ||||||||||||||||| || ||||| || | || ||||| || || Sbjct 76910120 AAATCACTTCTCAGAAAGTAGATTGTATGTTTCAATTGCAGCATCAATATCTTCTTTGTG 76910061 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63621 ||| || || | || | ||| ||||| ||||| |||| |||| | | || | || Sbjct 76910060 AATCCCCACAGATACCCTCATCAACATATGCTGCGGTCGTTCAGCCACTTTTCCACTGAT 76910001 Query 63622 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 |||||||| || || ||||| || ||||||||||| |||||||| || | | Sbjct 76910000 CTTCAACAAATATGACCGTTCCAGTGTCTTAAAACCAAAGTAGTTGTAAACGAAATTCCA 76909941 Query 63682 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA-TGGTAA 63740 || || ||||| | || || || | ||| |||| |||| | || | || | | Sbjct 76909940 GTCATAGATAATGGCAGAATTCAGGTGATCTTTATTAGCCATAACAATGTCAAGTGCTGA 76909881 Query 63741 TACTTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCT 63800 ||| | | || ||| ||| | | | || | ||||| | |||||| | | ||||| Sbjct 76909880 -ACTGGCCACCATGGGAGAATATCTGCTGTTGTGTGGATTCATGTAGTTGTAGAGATCCT 76909822 Query 63801 CCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAG 63860 ||||| | || | || | ||| |||||||||||||| | || || || || || || | Sbjct 76909821 CCATCCCATCGCCGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTTG 76909762 Query 63861 CGGCTAGAATGGCATAATCCGGATG--TTGTGTAGTA--CAAGTGGCTGCTATTTCGGCT 63916 | || || |||||||| || || || | | | ||| || ||||| ||| | || || Sbjct 76909761 CTGCCAGGATGGCATAGTCAGGGTGCTTCGCTTCGTAGTCAGGTGGCAGCTGTCTCAGCA 76909702 Query 63917 GCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATA 63976 ||||| ||||||| ||| || || || || ||| | | || |||||| | || ||||| Sbjct 76909701 GCCAGGGTGTCCAGTTCCACTGTGGTGACCCCACTGTGTAGGCCTTGGCTTACTTTCATG 76909642 Query 63977 GCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGA 64036 | || | | |||| | | | || | || | |||||||| | ||| || || Sbjct 76909641 GTGATCTGAGCAGGAGCAACAAAGTCCATATTGAGCCCATAACAGAGTTTCTGGATTCGT 76909582 Query 64037 GATGTGATTTTATCAAACATGAC 64059 ||||| ||||| |||||||| || Sbjct 76909581 GATGTAATTTTGTCAAACATAAC 76909559 >seq297 Length=62275575 Score = 430 bits (476), Expect = 2e-115 Identities = 632/892 (71%), Gaps = 7/892 (1%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| | ||||| || || || || || || || || || ||||| ||| Sbjct 25392880 GACATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCT 25392821 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||| ||| ||||| |||||||| || |||||||| || || |||| || ||||| Sbjct 25392820 TCTAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAA 25392761 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 |||| || || | || || || ||||| || || || ||||||| ||| Sbjct 25392760 CCCAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAA 25392701 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 ||||| || || || || || || || ||| | || || || || || || || |||| Sbjct 25392700 TTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACC 25392641 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 32652 |||| || || || | ||||| | | || || || ||| | || || | Sbjct 25392640 GCGTTGGTAATTATTTCTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGG--TGCTTGA 25392583 Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| || || || || ||||| |||||||| ||||| ||||| | ||| ||||||| Sbjct 25392582 ACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAA 25392523 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || || || ||||| || || || || || ||||| ||||| || ||||| || |||| Sbjct 25392522 ATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAG 25392463 Query 32773 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGC 32829 ||||||| ||||||||||| || || ||||| | || || |||||||| | | | Sbjct 25392462 AAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTT 25392403 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 |||| ||||| ||||| || |||||||| || ||||||||||||||||| | Sbjct 25392402 TGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAA 25392343 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || || |||||||| | | |||| || |||||||| || || ||||| | |||| Sbjct 25392342 TGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGAC 25392283 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | |||||||| || || ||||| || ||||| ||||| || || ||||| || | |||| Sbjct 25392282 TGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCT 25392223 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | || | || |||||| | |||||| || | || || ||||| ||||| || |||| Sbjct 25392222 CTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCAC 25392163 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 | || ||||| || |||| ||||| |||||||| | | || |||||| | || | Sbjct 25392162 TCGCCGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTT 25392103 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 ||| | | ||||| || || | ||||| || || | |||||||| || ||||| | Sbjct 25392102 CCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAG 25392043 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | || || ||||| | |||||| ||||| |||| || ||||| | ||| || Sbjct 25392042 CTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGAA 25391991 >seq1 Length=282763074 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || |||||||| || || || | Sbjct 167557814 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTGTAAGGCTCAATG 167557755 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 167557754 GACTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 167557695 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | |||||| Sbjct 167557694 CTGTTTCTTATACCGTA 167557678 Score = 109 bits (120), Expect = 7e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || ||||| |||||||||||||| || ||||||||||||||| Sbjct 167546974 GTCCCAGCATTGAAGAGAGTCGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGTAGATTG 167546915 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || ||||| || | || ||||| || ||||| || || | || | ||| ||| Sbjct 167546914 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 167546855 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||||||| Sbjct 167546854 ATGTGCTGTGGTCTTTCA 167546837 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 167560806 TCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATATGGATGT 167560747 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || |||||||||||||| || || || || || ||||| || | || |||| Sbjct 167560746 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 167560687 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 167560686 TCTGAGAGATTTCCCACACGGTCTTATAGAGCTGCTTCAGGTCCTCAGGAA 167560636 Score = 82.4 bits (90), Expect = 1e-10 Identities = 205/307 (67%), Gaps = 7/307 (2%) Strand=Plus/Plus Query 30429 CCTCTATCTGTACTATCTAGATATTGTACTTCTTTCAGTTCTGGATAATATATACGTTGA 30488 ||||| || || |||| || ||| || || | | ||||||||| || || | Sbjct 48565194 CCTCTCTCAGTGTTATCCAGTGTTTGCACCTCCTCTAAGTCTGGATAAAGAATCCGCTCC 48565253 Query 30489 TAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTGAATGTACATTTTCCATTATTA 30548 | || ||||| || || | || || | || || | ||| | ||||||| ||| Sbjct 48565254 CAAATGAGCTGCGCGATCCGGTCACCTTTTTTCACCTCGAACTTCTCTTTTCCAAAATTG 48565313 Query 30549 ATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCA 30608 | || | ||| || | |||||| ||||||||||||||||| |||||| |||||| ||| Sbjct 48565314 AACAGCACGACGCCGACATTTCCTCTATAATCTTCGTCTATGACACCGGCTCCTACATCT 48565373 Query 30609 AT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGC 30665 || | |||| | || ||||| | ||||| | ||| || ||||| ||| Sbjct 48565374 ATGAAGTGCTTTACAGCCAAGCCAGAACGTGGAGCCACTCTTCCGTAGCACCCAGAAGGA 48565433 Query 30666 ATGGACATACTAATATCTGTCTTAATTAATTGTCTTTCTCC-TGGA-GGGATAGTATAAT 30723 | | || ||| |||||||| | | | |||||||| |||| || || ||||||| Sbjct 48565434 ACAGCTATCTGAATGTCTGTCTTCA--CAAGGGCTTTCTCCATGGATGGAATTGTATAAT 48565491 Query 30724 CATAAGC 30730 |||| || Sbjct 48565492 CATAGGC 48565498 >seq117 Length=147991367 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| ||||| | || |||||||| || || || ||||| || || || || | Sbjct 43887779 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCT 43887720 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| ||||||||||| || || |||| Sbjct 43887719 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGG 43887660 Query 32803 CAATAAGTCTCTCTCC 32818 | | || || ||||| Sbjct 43887659 CCACAACTCGTTCTCC 43887644 >seq129 Length=145729302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | ||| || ||||| || || || ||||| ||||| | ||| || Sbjct 76759206 TCATCCCTGCTGATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTT 76759265 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | |||||||||||||| |||||||| |||||||| || || ||||| Sbjct 76759266 AGCCAGAATATAGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624436018000