Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq97 111 1e-19 seq174 107 2e-18 seq219 96.9 3e-15 seq232 95.1 1e-14 >seq97 Length=173707219 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 138042729 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 138042788 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 138042789 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 138042848 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 138042849 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAA 138042908 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 138042909 CATCCAGAAAGAGTCAACCCTGCA 138042932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| | ||||||||||| | | || || ||||||| || | || || | Sbjct 159895094 ACGATGCAGAGTTTTGTAAAGACCCTTATAGGGAAGACCATCACGCTCAAGGTTGAACCC 159895153 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| || | ||| || ||| || | ||||| | ||| ||||| Sbjct 159895154 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGGAACTCCTCCTGAT 159895213 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || ||||||||| || ||| || || ||| Sbjct 159895214 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTAGAAGATGGCCGTACTTTGTCTGACTAC 159895273 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || |||||||| || ||||| || ||| | ||||| || || Sbjct 159895274 AACATTCAAAAGGAGTCCACTCTCCATCTCGTGCTGAGACT 159895314 >seq174 Length=112626471 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||| | | ||| ||||| ||||||| || ||||||| | || |||||| | Sbjct 49699423 AATGCAATTCTCTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 49699364 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 49699363 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 49699304 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 49699303 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAA 49699244 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 49699243 CATCCAGAAAGAGTCAACCCTGCA 49699220 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 48881514 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 48881573 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 48881574 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 48881633 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 48881634 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAC 48881693 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 48881694 ATCCAGAAAGAGTCAACCCTGCA 48881716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || |||||| | | Sbjct 48881286 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 48881345 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| || ||||| || || || |||||||| Sbjct 48881346 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCAG 48881405 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 48881406 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 48881465 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 48881466 ATCCAGAAGGAGTCAACCCTGCA 48881488 >seq219 Length=114033958 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 14315933 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 14315874 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||| || ||||| || ||| || || || || || || |||||||| Sbjct 14315873 TGACACCATCAAGAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 14315814 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 14315813 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 14315754 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||| | || || || || |||| || Sbjct 14315753 CATCCAGAAAAAGTCAACCCTGCACCTAGTCCT 14315721 >seq232 Length=115493446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 36865809 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAG 36865868 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || || | || || |||||||| Sbjct 36865869 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGAGCATCCCCCCTGACCA 36865928 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||| || | |||||||||||||| || | ||||||| ||||| Sbjct 36865929 GCAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCAC 36865973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322956468325