Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq297 324 2e-83 seq117 98.7 1e-15 >seq297 Length=62275575 Score = 324 bits (358), Expect = 2e-83 Identities = 546/785 (70%), Gaps = 4/785 (1%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || ||||| || |||||||| |||||| |||||||| || | || Sbjct 25392742 CTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAGCTTC 25392683 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 ||||| || || || || | ||| || | ||| || || || | | | |||||| Sbjct 25392682 ACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATTTCT 25392623 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||||||| | | || || ||||| | | ||| |||| | ||| |||||||| Sbjct 25392622 TTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCAAAGTCA 25392563 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAG 93162 || | ||| || |||| || || || | ||||| ||||| | || || | ||| Sbjct 25392562 CAGTGCAGACCCTCATCTC-TGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGCATCAG 25392504 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 ||| |||||||||||||| |||||||| |||||| ||||||||| || || ||||| || Sbjct 25392503 TCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTAC 25392444 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || || || ||||||| ||||| || | | || || | ||||| || Sbjct 25392443 CGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAACGCAA 25392384 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 ||||| || || || ||||| | |||||| | ||| || || ||||| || || || || Sbjct 25392383 GGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGAGATATTC 25392324 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || || | |||||| ||||| || || || | ||| |||||||| || || | Sbjct 25392323 TCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCGGAGTGTAT 25392264 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 |||||||| ||||||||||| || |||||||| | || || |||| || |||||||| Sbjct 25392263 GTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTGAACTTCTTG 25392204 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||| ||| || | || ||||||||||| ||||| || ||||| || |||| Sbjct 25392203 GCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAAAGAAGGCCAG 25392144 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTT 93581 | ||| |||||||||| ||||||| ||| || ||||| | | || | ||| | Sbjct 25392143 AACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCTGA-ATATCCT 25392085 Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641 | ||||| || || || ||| |||||||||| || || || ||||| |||||||| | || Sbjct 25392084 TGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTGCC 25392025 Query 93642 ATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACG 93701 | || || || |||| || ||||| | || ||||| || || ||| | ||||||| Sbjct 25392024 AGATATCATGGTATTCGATGGGAAAGACAACGAAACGGCGGGGATTTTCTCTCAGTAACG 25391965 Query 93702 GCTCT 93706 ||||| Sbjct 25391964 GCTCT 25391960 >seq117 Length=147991367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| ||||| | || || | |||||| |||||||||||||| |||||||| || Sbjct 43887760 CTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGC 43887701 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 |||| ||||||||| || || ||||| || || || || ||||||| ||||| Sbjct 43887700 AAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTC 43887647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854152474200