Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq97 104 2e-17 seq206 100 2e-16 seq174 87.8 2e-12 seq312 86.0 5e-12 seq1 86.0 5e-12 seq301 82.4 6e-11 >seq97 Length=173707219 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| ||||||| || | ||| | || || || |||||||||||||| || | Sbjct 138628758 CCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 138628817 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| | || |||||||| |||| | | ||| || || |||||| Sbjct 138628818 AAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 138628877 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 138628878 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 138628937 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||||||||| Sbjct 138628938 TCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| ||||||| || | ||| | || || || |||||||||||||| || | Sbjct 159895323 CCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 159895264 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| || || |||||||| |||| | | ||| || || |||||| Sbjct 159895263 AAAGTACGGCCATCTTCTAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGA 159895204 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 | ||||| | || ||||| |||| | ||| | ||||| | || ||| || Sbjct 159895203 GTTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 159895144 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | || | || || || | || || ||||||||| ||||||| Sbjct 159895143 TTGAGCGTGATGGTCTTCCCTATAAGGGTCTTTACAAAACTCTGCAT 159895097 >seq206 Length=52716770 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || || || |||||| || || || || Sbjct 36641103 GTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36641044 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| || || ||||| || ||||| |||||| || Sbjct 36641043 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36640984 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| ||||| |||| ||| | || ||||| ||||| || Sbjct 36640983 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36640924 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 36640923 TTCACAAAGATCTGCATG 36640906 >seq174 Length=112626471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| | || || |||||| || || || || Sbjct 48881710 GTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 48881651 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||| ||||| || ||||| || Sbjct 48881650 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 48881591 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 48881590 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 48881531 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 48881530 TTCACGAAGATCTGCATG 48881513 >seq312 Length=159970021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 114161 ACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGT 114220 ||| ||||||| || | ||| | | | || || |||||||||||||| || || ||| Sbjct 72456618 ACGAAGTCTCAGCACCAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 72456677 Query 114221 ACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCC 114280 ||| |||||| || || | |||||| |||| | | ||| | || |||||||| || Sbjct 72456678 ACGGCCATCTTCCAGCTGCTCACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCC 72456737 Query 114281 TTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCAC 114340 ||| | || ||||| |||| | ||| | ||||| | || ||| | || | Sbjct 72456738 TTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCGAG 72456797 Query 114341 GGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 114385 || | || || || || || || || |||||||||||||| || Sbjct 72456798 CGTGAGGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCATCGC 72456842 >seq1 Length=282763074 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||| | ||||||| || | ||| | || || || |||||||||||||| || | Sbjct 255573151 CCACCATGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 255573210 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| | |||| || || |||||||| ||| | | ||| || || |||||| Sbjct 255573211 AAAGTACGGCCACCTTCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGA 255573270 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 | |||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 255573271 GTTTCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACT 255573330 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || |||||||||||||| Sbjct 255573331 TCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 255573377 >seq301 Length=56205956 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| ||||||| | ||| | || || || |||||| ||||| | || | Sbjct 23716602 CCACCACGAAGTCTCAGCCGGAGATGGAGAGTGGACTCCTTTTGA-TGTTGCAGTCAGAC 23716544 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| |||||||| |||| | | ||| | || |||||| Sbjct 23716543 AAAGTACGGCCATCTTCTAGTTGCTTACCAGCCAAGATCAACCTCTGCAGATCAGGAGGA 23716484 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || ||||| |||| | ||| | ||||| | || ||| || Sbjct 23716483 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 23716424 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || || || ||||||||||||| Sbjct 23716423 TCGAGCGTGATAGTCTTTCCTGTAAGGGTCTTCTCAAAAATCTGCAT 23716377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129510029460