Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq297 235 1e-56 seq1 96.9 7e-15 >seq297 Length=62275575 Score = 235 bits (260), Expect = 1e-56 Identities = 580/871 (67%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || |||||| ||||||||||| || || |||| ||||| ||| Sbjct 25392006 ATCGAATACCATGATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCC 25392065 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGA-GAAC 42398 |||||| | ||||| ||||||| | | || |||||| | ||| | || || Sbjct 25392066 GAGGAGGTGGACCTTTCCAAGGATATTCAGCA--CTGGGAAGCTCTGAAACCAGATGAGA 25392123 Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 || | || | |||| | ||||||||||| || || ||| |||||||||||| Sbjct 25392124 GACATTTTATATCTCATG----TTCTGGCCTTCTTTGCGGCGAGTGATGGCATAGTCAAT 25392179 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTAC 42518 |||||| ||| | || | |||| || || | ||||| ||||| ||||| Sbjct 25392180 GAGAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTAT 25392239 Query 42519 GGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---AC 42575 |||||||| || ||||| |||||| | ||||| || ||||| | || || | || Sbjct 25392240 GGCTTCCAAATTGCCATGGAGAACATACACTCCGAAATGTAC---AGTCTCCTTATTGAC 25392296 Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCC 42635 || ||||| ||| || || | | || ||||| ||||| ||||| ||||| Sbjct 25392297 ACTTACATTAAAGATTCCAAAGAAAGAGAATATCTCTTCAACGCCATTGAGACAATGCCT 25392356 Query 42636 TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTC 42695 || | ||||||||||| |||||||| | ||||| | | || || |||| Sbjct 25392357 TGTGTGAAGAAGAAGGCTGACTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACGTAT 25392416 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || | | || ||||| | || || || || |||||||| || || | || || Sbjct 25392417 GGAGAACGAGTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 25392476 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 || || |||||||||||| | | || | | |||||| || || || || || || ||||| Sbjct 25392477 TCAATATTCTGGCTCAAG-AAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAACT 25392535 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 || ||||| || ||||| ||||| | |||||||||||||| ||||| | ||||| Sbjct 25392536 TATTAGCAGAGATGAGGGTCTGCACTGTGACTTTGCCTGCCTGATGTTC---AAGCACCT 25392592 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 |||||||||||| || || | || | || || || | || || ||| || Sbjct 25392593 GGTACACAAGCCCTCGGAGCAGAGAGTAAAAGAAATAATTACCAACGCGGTCAGGATAGA 25392652 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | ||||||||||||| || | ||||| ||| || |||| ||||| | | | || Sbjct 25392653 GCAGGAGTTCCTCACAGAGGCCCTGCCTGTGAAGCTCATCGGGATGAATTGCACCTTGAT 25392712 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCT 43054 | |||||||| ||| || |||||| || || || ||||| | | | | Sbjct 25392713 GAAGCAGTACATCGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGAT 25392772 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 | ||| || || ||||| |||||||| || || | || || || || || Sbjct 25392773 TTTCAAAGTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTAGAAGGAAAAACAAA 25392832 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| || |||||||| || | ||| |||||| Sbjct 25392833 CTTCTTTGAGAAGCGAGTAGGCGAGTACCAG 25392863 >seq1 Length=282763074 Score = 96.9 bits (106), Expect = 7e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| || ||||| ||||| ||||| |||||||||||||| ||||||| ||| | Sbjct 167553505 TGGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCT 167553446 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 | ||| ||| ||| |||| ||| |||||||||||| Sbjct 167553445 GGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATG 167553408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327926950800