Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq166 100 3e-16 >seq166 Length=122095297 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || | ||| |||| ||| || || | || | ||||||||||||||| || || Sbjct 121921524 AGGCCCGTGATATGTGCAATCATGTAGGTCAGCAGAGCATAGCTGGCAATGTTGAAGGGC 121921583 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| |||||| ||||| |||| ||| || ||||| || || ||||| || | | Sbjct 121921584 ACACCCAGACCCATATCTCCTGACCGCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 121921643 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 |||||||||||||| | || || || || || ||||||| Sbjct 121921644 ACATAAAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCA 121921686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441367531112200