Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_009540.1 Length=49902 Score E Sequences producing significant alignments: (Bits) Value seq473 150 6e-32 >seq473 Length=26706 Score = 150 bits (166), Expect = 6e-32 Identities = 347/508 (68%), Gaps = 16/508 (3%) Strand=Plus/Minus Query 45966 TCCGGCATCACAAAACCGTTACCCGTCCAAAGGCAAGtttttttGGTGTACGCATCGCGA 46025 |||||||| || || ||| | ||||| || ||||| || || | ||| |||||||| Sbjct 26702 TCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGCGC 26643 Query 46026 GCAGGAATG-ATTTCAGGAAAGTGAGGATGTTTATCATCTTCCGGCA-ACAGACCGCCAA 46083 | | || | || |||| | ||||| |||| || || | | || |||||| Sbjct 26642 GGCGCGATATACATCGGGAACCAG-GGATGCGCGTCATTCTCAGGAAGATAG-CCGCCAT 26585 Query 46084 ACGCGCAAGGATGAAATATAAAATCGGGTTGCCGCCACATCGACGACAGGACGCTAACAG 46143 || | || |||| || || |||| | ||| || ||||||||||| || | Sbjct 26584 ACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACCG 26525 Query 46144 GATTCTCGATCACGTATGGCACATTGAACCAATCCGCAATTTCAGCCGCAAT-CTTGCAT 46202 ||||||| || | ||| | ||| | | ||| |||| | || ||||| | ||| Sbjct 26524 GATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCA- 26466 Query 46203 GTTGAAACTGCCTTATCCTGGAATAGCGGATCACGTTCACGCTTTGCGGAAAAGTGACGC 46262 || | || || || ||||||||||||||||||||||||||||| || ||| || || Sbjct 26465 GTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCGA 26406 Query 46263 GAACCGCTAACAGCTAAATCAGTGCATGGAGGAAACGCGATCACAAAATCAGGCTTGCCG 46322 | ||| |||||||| | |||||||||||| | || || || | |||||| || ||| | Sbjct 26405 GCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTCA 26346 Query 46323 TAAACCTCATTGCGAGCCT-TAAAGCT-GAAATCTGAATCAATCCAAACGTTCACATACT 46380 || || | |||| | | | | | | ||| | |||||| | ||||||||||||| Sbjct 26345 TACACACC--CGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 26288 Query 46381 CAATGTTGGGATGACTTACGC--GCACTGAA---TG-GTAATCACCATGATCGGCATCAT 46434 ||||||| ||||| ||| | || || | || |||||| || |||||||| | | Sbjct 26287 CAATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGT 26228 Query 46435 CATAATTGAAACAGATTACTTTGTGACC 46462 || | ||||| || || || || ||||| Sbjct 26227 CAAAGTTGAAGCACATCACCTTATGACC 26200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159562990435440