Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq97 89.7 5e-13 >seq97 Length=173707219 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || || | || ||||| | | Sbjct 138628791 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTACCAGCA 138628850 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 138628851 AAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 138628910 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || ||||||| ||| | || || || || || || || Sbjct 138628911 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTC 138628970 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 138628971 ACAAAAATCTGCAT 138628984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256475867600