Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq206 109 5e-19 seq97 100 3e-16 seq174 87.8 2e-12 seq1 86.0 6e-12 seq312 82.4 7e-11 >seq206 Length=52716770 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| || ||||| ||| || ||||| || || Sbjct 36641103 GTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36641044 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36641043 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36640984 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36640983 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36640924 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36640923 TTCACAAAGATCTGCATG 36640906 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36640647 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36640588 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36640587 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36640528 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36640527 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36640468 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36640467 TTCACAAAGATCTGCATG 36640450 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36640875 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36640816 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36640815 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36640756 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36640755 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36640696 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36640695 TTCACAAAGATCTGCATG 36640678 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36641331 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36641272 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36641271 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36641212 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36641211 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36641152 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36641151 TTCACAAAGATCTGCATG 36641134 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 36641577 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 36641518 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || |||||||||||| Sbjct 36641517 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 36641458 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||| | |||||| | |||||| || | ||| | Sbjct 36641457 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 36641398 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 36641397 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641362 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36641787 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36641728 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36641727 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36641668 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36641667 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36641608 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36641607 TTCACAAAGATCTGCATG 36641590 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 36642033 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 36641974 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || |||||||||||| Sbjct 36641973 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 36641914 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||| | |||||| | |||||| || | ||| | Sbjct 36641913 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 36641854 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 36641853 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36641818 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36642243 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36642184 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36642183 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36642124 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || ||||| ||||| || Sbjct 36642123 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 36642064 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 36642063 TTCACAAAGATCTGCATG 36642046 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 36642489 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCA 36642430 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || |||||||||||| Sbjct 36642429 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 36642370 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | ||| | |||||| | |||||| || | ||| | Sbjct 36642369 TCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 36642310 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 36642309 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 36642274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || || Sbjct 36640419 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 36640360 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||||||| ||| || |||| Sbjct 36640359 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTG 36640300 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | |||||| || | ||| | || || || || | ||| Sbjct 36640299 ACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTT 36640240 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 36640239 TTCACAAAGATCTGCAT 36640223 >seq97 Length=173707219 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || ||| | ||| | || ||||| |||||||| ||||| || Sbjct 138628755 GCGCCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 138628814 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | ||| || ||||| ||||||| | ||||||||| ||| Sbjct 138628815 GACAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGA 138628874 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 138628875 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 138628934 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || || || || || |||||||||||||| Sbjct 138628935 ACCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 >seq174 Length=112626471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || |||||||| | ||||| ||| || ||||| || || Sbjct 48881710 GTTGACTCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 48881651 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || |||||||| || ||| ||| || ||| Sbjct 48881650 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTC 48881591 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 48881590 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 48881531 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 48881530 TTCACGAAGATCTGCATG 48881513 >seq1 Length=282763074 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || || ||| | ||| | || ||||| |||||||| ||||| || Sbjct 255573148 GCGCCACCATGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCA 255573207 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || | | || ||||| || ||||| ||| ||| | ||||||||| ||| Sbjct 255573208 GACAAAGTACGGCCACCTTCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGA 255573267 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || | | ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 255573268 GGAGTTTCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 255573327 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| || | || || || || || || || |||||||||||||| Sbjct 255573328 ACTTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 255573377 >seq312 Length=159970021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || |||| || | || || ||||| ||| | | | ||||| |||||||| ||||| || Sbjct 72456610 GCGCCACTACGAAGTCTCAGCACCAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCA 72456669 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| | ||||| ||||||| | ||||| ||| ||| Sbjct 72456670 GACAAAGTACGGCCATCTTCCAGCTGCTCACCAGCAAAGATCAACCTCTGCTCATCAGGA 72456729 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || |||| ||| ||| || ||| | | ||| | ||||| | || Sbjct 72456730 GGAATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCA 72456789 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 | |||| || | || || || || || || || |||||||||||||| || Sbjct 72456790 GCCTCGAGCGTGAGGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCATCGC 72456842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495123709200