Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_012223.2 Length=44899 Score E Sequences producing significant alignments: (Bits) Value seq473 93.3 1e-14 >seq473 Length=26706 Score = 93.3 bits (102), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 27578 TCTCTGGTATACGGAAGCCGTTGCCGGTCCATAAGCAGGTCAGCTTCGGATATGAATCGC 27637 |||| || ||| |||| ||| |||||| | || ||| |||||| || | ||||| Sbjct 26704 TCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGC 26645 Query 27638 G-GGCGTTGATGTATTCCGGGAAGAGCGGGTGCACGTCATCCTCCGGCAAATAGCCGCCA 27696 | |||| ||| || |||||| || ||| |||||| ||| || | |||||||||| Sbjct 26644 GCGGCGC-GATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCCA 26586 Query 27697 TACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCATTGAGTGGAGAGCACGCTGCGC 27756 |||||||| || | || ||||| | || || | |||| || || || ||||| | Sbjct 26585 TACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACC 26526 Query 27757 GGATTCTCAATCATATATGGCAC 27779 ||||||||||| || || | ||| Sbjct 26525 GGATTCTCAATTATGTAAGTCAC 26503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143553571994310