Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq219 163 4e-35 seq55 140 5e-28 >seq219 Length=114033958 Score = 163 bits (180), Expect = 4e-35 Identities = 213/295 (72%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 8881 GAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGT 8940 ||| | ||| || ||||| || |||||||| || ||||| |||||||| | || || Sbjct 67356803 GAAAGAGGCAAAGGGACACCCTTTCACATTATTGCAGATGAGAGACTGAATTGAGGCAGT 67356744 Query 8941 TTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGA 9000 || | ||| ||||| || || || ||||||||||| ||||||||||| || || Sbjct 67356743 GTTGATGATCCTAAAACCCACTTCTCCTCCGAAGGTGCTAGGTTTCCAGTATTGAGGAGA 67356684 Query 9001 GCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCT 9060 |||||| || |||| || ||||||||||| || ||||| || || || | ||| | Sbjct 67356683 ACAGATGGGATTACCCATAAGGCCTTTCAAGGAGAATGGAGCTCCAAGTTCTACCATGGT 67356624 Query 9061 CTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGAC 9120 ||| || ||||| ||| | ||||| || ||||| || | | | | | || ||||| | Sbjct 67356623 CTCCCCAAAGATAGCATCTGGACGAGGCTTTTCCACCAGCAGGGCGGGATACAGTTCCAT 67356564 Query 9121 AGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| ||| |||||||||| |||||| ||||| || || ||||| ||| Sbjct 67356563 GGCATCGATGTCATGGTAGAGGGCTTTCAACTCTGCAGCCATTTCTTTCTCTCCT 67356509 Score = 122 bits (134), Expect = 1e-22 Identities = 204/293 (70%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || ||||||||||| ||||| || ||||| || || || | |||||| | | ||| Sbjct 67355718 CCGGCCAGCAATCTGTCTGGTGAATGACTCAACAAAGTGAGCAAGTCCGTGTTCAAGGAG 67355659 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | || |||| | || |||| | ||| | ||| || Sbjct 67355658 GATGGAGTTGTTGTAGAGAAACTGTTTGAAAGTGTACTCCTGGTCTTCAATGTTGAAGGT 67355599 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 || |||| ||| | ||||||| | ||||| || ||||| || | || || |||||||| Sbjct 67355598 GTCCGGCAGCAGCGGATGCCAGTGATAGAGTGTGTTGAATTCAGAGGCAATGCGGTTCTG 67355539 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| ||| || | ||| ||||| || | || | ||||||||| Sbjct 67355538 ATACTGGAACTGCTGGT--TGAAAAGCAGCTCTGGGTCGAACTTGAGTTTGAAGTGGTAA 67355481 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || || || || || | | ||| | || || || || || || || Sbjct 67355480 CCGCTCAGGTGTTGCACGTAGTCTTCGATCACTATCTTGATCGTCTCTCCTGT 67355428 >seq55 Length=177699992 Score = 140 bits (154), Expect = 5e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||||| ||||| || || || ||||| |||||||||||||||||| | Sbjct 15581302 GCTGTGTTAACGATGTTGAAACCCACATCACCACCGAATGTGCTGGGTTTCCAGTACTCT 15581243 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| ||| | | ||| || || | ||| || |||||||||| ||| || Sbjct 15581242 GGGGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAGAAAGGAGCCCCCATCTCTATC 15581183 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 |||||||| || |||| || ||| | || || | || | || | ||||| Sbjct 15581182 ATGCTCTCCCCAAAGAGGGAGTTGGGCTGGCACTTCTCCAGCATCAGCCCCGGGTAGAAC 15581123 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| ||||| || | |||||||| || || ||||||||||| ||| Sbjct 15581122 TCTAAAGCATCGATGTCACCATATAGCTCCTCCAACTCAGCGGCCATCTCCTTCTCTCCT 15581063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723719360497000