Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq129 82.4 9e-11 >seq129 Length=145729302 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 127552 GATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 127611 ||| |||||||| || || ||| || |||||||| || | |||||| | |||||| || Sbjct 76759217 GATCAGTTCATTTGAAAAAGTCAGCCCAGGCATGAGGCCTCTCTTCTTTAGCCAGAATAT 76759276 Query 127612 CGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659 ||| |||||| ||||||||||| ||||| || ||| ||||| || Sbjct 76759277 AGCAGCAAATGATCCAGAGAAGAAAATCCCTTCTACAGCAGCGAAGGC 76759324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499876257800