Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_013600.1 Length=45169 Score E Sequences producing significant alignments: (Bits) Value seq473 84.2 6e-12 >seq473 Length=26706 Score = 84.2 bits (92), Expect = 6e-12 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 26908 TCTCTGGCATACGGAAGCCGTTGCCGGTCCATAAGCAGGTCAGCTTCGGATATGAATCGC 26967 |||| |||||| |||| ||| |||||| | || ||| |||||| || | ||||| Sbjct 26704 TCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGC 26645 Query 26968 G-GGCGTTGATGTATTCCGGGAAGAGCGGGTGTACGTCATCATCCGGCAGATATCCCCCA 27026 | |||| ||| || |||||| || || |||||| || || ||||| || ||| Sbjct 26644 GCGGCGC-GATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCCA 26586 Query 27027 TACTCCCACGGGTCGAATGAGTGATCCGGTTTGCGCCACTGGGTGGATAGCACACTGCGC 27086 |||||||| || | ||| ||||||| ||||| | ||| | || || || || | Sbjct 26585 TACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACC 26526 Query 27087 GGATTCTCAATCATATATGGCAC 27109 ||||||||||| || || | ||| Sbjct 26525 GGATTCTCAATTATGTAAGTCAC 26503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144417562196010