Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq232 109 9e-19 seq1 102 1e-16 >seq232 Length=115493446 Score = 109 bits (120), Expect = 9e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||||| || ||||| || || | || || || || || | || | ||| ||||| | Sbjct 76911776 TCTTGTTCAGAGTGAAGTGGATTGGATTAACAGCGGGTCTTGTCCTTAAATAATACATCC 76911717 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| |||| || ||| || || | |||||| || ||||||| ||||| Sbjct 76911716 GAGTCTTTAAACCCTGCTTCCAACCATAAAAGTGCATACTAGTTAGTTTGCCGTAGTTGG 76911657 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | || || || || ||||| | |||||||||||| | || |||| |||| | || || Sbjct 76911656 GCTCAGCAATATGGATGTTTAAAGACTGGCTTTGATTGACGAAA-ACGCCTCTCTCAGCT 76911598 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||| |||| || |||||||| || || ||||||| ||||| Sbjct 76911597 GCCATCTTGAGAACAGTCTTCTGAGAGATTTCCCACATGGTCTT 76911554 >seq1 Length=282763074 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| || ||||||| |||||| || || || | Sbjct 167560812 CCTGCTTCCAACCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTGGGCTCAGCGATAT 167560753 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| | |||||||||||| |||||||||| | | || || ||||| |||| || Sbjct 167560752 GGATGTTTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAA 167560693 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||||| || || |||||||| ||||| Sbjct 167560692 CAGTCTTCTGAGAGATTTCCCACACGGTCTT 167560662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145707834800