Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq297 372 3e-98 seq174 140 3e-28 seq206 136 4e-27 seq97 136 4e-27 seq219 123 2e-23 seq232 120 3e-22 seq312 95.1 1e-14 seq129 89.7 5e-13 seq80 84.2 2e-11 seq117 82.4 8e-11 >seq297 Length=62275575 Score = 372 bits (412), Expect = 3e-98 Identities = 637/914 (70%), Gaps = 24/914 (3%) Strand=Plus/Minus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || || ||||| || |||||||| || || |||||||| || | ||||| | | Sbjct 25392862 TGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTCC 25392803 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || || || || || || || ||| | |||| | ||| || | | ||| Sbjct 25392802 ATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCTCCAGCATAAGC 25392743 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGCAGA 132783 ||||||||||| ||||||||||| ||| ||| ||| |||||| | || | || Sbjct 25392742 CTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGT---GCAATTCATCCCGATGAGC 25392686 Query 132784 CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATT 132843 ||| ||||| || || ||||| || ||||| || |||||||| ||| | ||| Sbjct 25392685 TTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTATT 25392626 Query 132844 TCCCTAACGC---GCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCA 132900 || | || | || ||| | ||| || |||| ||||||||||||| ||| ||| Sbjct 25392625 TCTTTTACTCTCTGCTCCGAG---GGCTTGTGTACCAGGTGCTTGAACATCAGGCAGGCA 25392569 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 ||||| || |||| ||||| || ||| ||| ||||| ||| || || | ||| ||| Sbjct 25392568 AAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGGC 25392509 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 || || || ||||| |||||||| ||||| | || ||| || |||||||||| || Sbjct 25392508 ATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCT 25392449 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAG 133080 || || || ||||| ||||| | || || || |||| || |||||| | ||||| Sbjct 25392448 TCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCAA 25392389 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 |||| ||||| || ||||| | || || || ||||| || || |||||||| || | Sbjct 25392388 CGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGA-- 25392331 Query 133141 CGGAGTTTCTC-TTCCGAGGAA---CGCACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196 || ||||| ||| |||| | ||| ||||| || ||| |||||||| Sbjct 25392330 --GATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTC 25392273 Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256 ||||||| |||||||||||| ||||| ||||| || || || || ||||| || || Sbjct 25392272 GGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTTG 25392213 Query 133257 CACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGA 133315 |||||||| || ||| ||||| |||| || || ||||| ||||| || || || || | Sbjct 25392212 AACTTCTTG-GCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAA 25392154 Query 133316 AAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC-TCCCAGTCG 133374 | |||||||| || || || ||||| | ||| | | ||| || || ||||||| Sbjct 25392153 AGAAGGCCAGAACATGAGATATAAAATGTCTCTC-ATCTGGTTTCAGAGCTTCCCAGTGC 25392095 Query 133375 CGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTG 133434 | | |||||||| ||||||||||||||| | |||||||| || ||||| ||||| ||| Sbjct 25392094 TGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTG 25392035 Query 133435 TACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCG 133494 ||||| ||| || || |||| |||||||| | || || |||||||| ||||| Sbjct 25392034 TACATCTGCCAGATATCATGGTATTCGATGGGAAAGACAACGAAACGGCGGGGATTTTCT 25391975 Query 133495 CGCAACAGCGGCTC 133508 | || | |||||| Sbjct 25391974 CTCAGTAACGGCTC 25391961 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || | |||||| |||||||| | || |||||| || Sbjct 30820143 AACATGCAGATCTTCGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGTCC 30820084 Query 38301 ACCGAC-AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | || | || | | || | || |||| |||| || | | ||| | || Sbjct 30820083 AGTGACCATCGAG--AATG-TCAAGGCCAAGATCCAGGACATGGAAGTCGTCCCC-CTGA 30820028 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| | || || | || |||||||||||||| || | |||||||| |||||| Sbjct 30820027 CCAGCAGAGACTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTGTCCGACTA 30819968 Query 38420 CAACATCCAAAAGGAAGCGACGC-TGCATTTGGTGCTGCGT 38459 ||||| ||| | || | || | |||| ||||||||||| Sbjct 30819967 CAACACCCAGAGAGAGTCCACCCTTGCACCTGGTGCTGCGT 30819927 >seq174 Length=112626471 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 48881286 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 48881345 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || |||||||| || ||| | ||||| Sbjct 48881346 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 48881404 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 48881405 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 48881464 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||| || || |||| |||||| Sbjct 48881465 CATCCAGAAGGAGTCAACCCTGCACCTGGTCCTCCGCCTGAGGGGCGGC 48881513 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 48881514 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 48881573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || |||||||| || ||| | ||||| Sbjct 48881574 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 48881632 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||||||| || ||||| Sbjct 48881633 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTACAA 48881692 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||| || || |||| || ||| Sbjct 48881693 CATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGC 48881741 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||| | | || || || || || ||||| ||||||||| | || || ||| || Sbjct 49699425 AAAATGCAATTCTCTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 49699366 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || |||||||| || ||| | || Sbjct 49699365 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGA 49699307 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||||||| || || Sbjct 49699306 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTA 49699247 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || ||||| |||| || || |||| |||||| Sbjct 49699246 CAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGCCTGAGGGGCGGC 49699195 Score = 116 bits (128), Expect = 4e-21 Identities = 173/235 (74%), Gaps = 13/235 (6%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || |||||||| ||||||||| | || || | ||| Sbjct 48880835 AAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTGG--GCC 48880892 Query 38301 ACC---GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 || |||| | | | |||| | ||| || |||| || ||||||| || ||| | Sbjct 48880893 CCCAGTGACACCATCGAGAACG--TGAAGCCAAGATCCG-GATTAAGAGGGCATCCCC-C 48880948 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 ||||| ||| ||||||| | |||| ||| |||||||| || | ||||||||| || Sbjct 48880949 TGACCAGCAGAGGCTCATCTTTGCGG-CAAGCAGCTGGAAGATGGCCGCACCCTCTCTGA 48881007 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| || || | || ||||| |||| || || |||| |||||| Sbjct 48881008 CTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCT-CG-CTGAGGGGCGGC 48881060 >seq206 Length=52716770 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36641363 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36641422 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36641423 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641482 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36641483 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 36641542 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| ||||| | ||||| ||| Sbjct 36641543 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGAGGGGGC 36641590 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36641819 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36641878 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36641879 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641938 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36641939 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 36641998 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| ||||| | ||||| ||| Sbjct 36641999 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGAGGGGGC 36642046 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36642275 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36642334 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36642335 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36642394 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36642395 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36642454 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| ||||| | ||||| ||| Sbjct 36642455 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGAGGGGGC 36642502 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36641135 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36641194 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36641195 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641254 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36641255 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36641314 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | ||||| ||| Sbjct 36641315 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36641362 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36642047 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36642106 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36642107 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36642166 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36642167 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36642226 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | ||||| ||| Sbjct 36642227 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36642274 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36640451 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36640510 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36640511 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36640570 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36640571 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36640630 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||| |||| || || | ||||| ||| Sbjct 36640631 ATCCAGAAGGAGTCCACCTTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36640678 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36640679 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36640738 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36640739 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36640798 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36640799 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36640858 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||| |||| || || | ||||| ||| Sbjct 36640859 ATCCAGAAGGAGTCCACCTTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36640906 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36640907 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36640966 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36640967 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641026 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| || |||||| Sbjct 36641027 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGATTACAAC 36641086 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||| || || | ||||| ||| Sbjct 36641087 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36641134 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 36641591 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGT 36641650 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36641651 GACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 36641710 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 36641711 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAAC 36641770 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||| |||| || || | ||||| ||| Sbjct 36641771 ATCCAGAAGGAGTCCACCTTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36641818 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| | || || || ||||||||| | || |||||| ||| Sbjct 36640222 AATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 36640281 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | || | ||| |||| ||||| ||||| || ||| | ||||| Sbjct 36640282 TGACACCATTGAAAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 36640341 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 36640342 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCAGACTACAA 36640401 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || |||| |||| || || | ||||| ||| Sbjct 36640402 CATCCAGAAGGAGTCCACCTTGCACCTGGTCCTTCGCCTCAGAGGGGGC 36640450 >seq97 Length=173707219 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 138042727 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 138042786 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || |||||||| || ||| | || Sbjct 138042787 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGA 138042845 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||||||| || || Sbjct 138042846 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTA 138042905 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || ||||| |||| || || |||| || ||| Sbjct 138042906 CAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCCGCCTGAGGGGTGGC 138042957 >seq219 Length=114033958 Score = 123 bits (136), Expect = 2e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 14315935 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 14315876 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| || || ||||| || ||| | || Sbjct 14315875 AGTGACACCATCAAGAACG-TGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 14315817 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| ||||||| | || ||||| |||||||| || | ||||||||| ||||| Sbjct 14315816 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 14315757 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 ||||||||| || | | || ||||| | || || || |||| Sbjct 14315756 CAACATCCAGAAAAAGTCAACCCTGCACCTAGTCCTCCGCCTGAG 14315712 >seq232 Length=115493446 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 36865807 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAGGTGGAGCCC 36865866 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || ||| | || ||| | ||| Sbjct 36865867 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGAGCATCCCCCCTGAC 36865926 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||||| || ||||| |||||||| || | ||||||||| || ||| Sbjct 36865927 CAGCAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGATTAC 36865986 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | |||||| |||| | || ||||| |||| || | |||| || ||| Sbjct 36865987 AGCATCCAGGAGGAGTCAACCCTGCACCTGGTCCTCCCACTGAGGGGTGGC 36866037 >seq312 Length=159970021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||| || || ||| | || || || || |||| | ||||||| | || || ||| Sbjct 54029048 AAAAAA--CAGATCTTCTTGAAGACCCTGACCAGCAAGATCATCACCCTGGAGGTGGAGC 54028991 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 ||| |||| | | | | | || | || |||| || |||||||| || ||| | | Sbjct 54028990 CCAATGACACCATCGAGAACATGAATGCCAAGATCCAGGATAAAGAGGGTATCCCC-CTG 54028932 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| ||||||| | || ||||| |||||||| || | | ||||||| || | Sbjct 54028931 ACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCACACCCTCTCTGATT 54028872 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || || | || ||||| |||| || | |||| || ||| Sbjct 54028871 ACAACATCCAGAAAGAGTCAACCCTGCACCTGGTCCTCTGCCTGAGGGGTGGC 54028819 >seq129 Length=145729302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 168/242 (69%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCA----CCGTCGACGTCGA 38296 ||||||||||| ||||| || || || || ||||| ||||||| || | || || || Sbjct 132017576 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCAATCGCCCTAGAAGTGGA 132017517 Query 38297 GGCCACCGA--CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT-TCC 38353 ||| ||| || || | || | | || | || |||| || |||||||| || ||| Sbjct 132017516 ACCCAGCGAACCATCGAG--AATG-TGAAGGCCAAGATCCAGGATAAAGAGGGCATCTCC 132017460 Query 38354 CG----CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 || ||||||| ||| ||||||| | || |||| |||||||| || | ||||||| Sbjct 132017459 CGCCCCCCGACCAGCAGAGGCTCATCTTTGCCCGCAAGCAGCTGGAAGATGGCCGCACCC 132017400 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 || || ||||| | | ||||| | || |||| |||| || || |||| || | Sbjct 132017399 TCTCTGATCACAACGTTCGGAAGGAGTCAACCCTGCGCCTGGTCCTCCGCCTGAGGGGTG 132017340 Query 38470 GC 38471 || Sbjct 132017339 GC 132017338 >seq80 Length=184226339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| |||||||| | || ||| || || Sbjct 171061833 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCAAGCCC 171061774 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || | ||| | ||| Sbjct 171061773 AGTGACACCATAGACAATATCAAGGCCAAGATCCAAGACAAGGAAGGCGTCCCC-CTGAC 171061715 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || | |||||||||||| || | |||||||| |||||| Sbjct 171061714 CACCAGAGGCTGATATTCGACGACAAACAGCTGGAGGATGGCCGCACCCTGTCAGACTAC 171061655 Query 38421 AACATCCAAAA 38431 ||||||| || Sbjct 171061654 GACATCCAGAA 171061644 >seq117 Length=147991367 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 12/202 (6%) Strand=Plus/Minus Query 132724 AGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGC 132780 |||||||||||||| ||||||||||| ||| ||| ||| |||||| | || | Sbjct 43889234 AGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGT---GCAATTCATCCCGATG 43889178 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || ||| ||||| || || ||||| || ||||| || ||||| || ||| | Sbjct 43889177 AGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGAGTTGGTAATT 43889118 Query 132841 ATTTCCCTAACGC---GCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAA 132897 ||||| | || | || ||| | ||| || |||| ||||||||||||| ||| Sbjct 43889117 ATTTCTTTTACTCTCTGCTCCGAG---GGCTTGTGTACCAGGTGCTTGAACATCAGGCAG 43889061 Query 132898 GCAAAGTCGCAATGCAAGCCCT 132919 |||||||| || |||| |||| Sbjct 43889060 GCAAAGTCACAGTGCAGACCCT 43889039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166829187200