Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 >seq1 Length=282763074 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||||||| || ||||| |||| |||| | ||| || || || Sbjct 167553516 CTCATCTTTACTGGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCC 167553457 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| ||| || | || |||||||||||||| || || || Sbjct 167553456 CAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCC 167553397 Query 106612 CGTCTCCGTCTGTGACT 106628 |||||||||||| |||| Sbjct 167553396 CGTCTCCGTCTGAGACT 167553380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973757104200