Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq97 138 3e-28 seq80 138 3e-28 seq1 120 7e-23 >seq97 Length=173707219 Score = 138 bits (152), Expect = 3e-28 Identities = 330/492 (67%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 9180 GTGATCGGGCCGTATTACCCGAAGGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACGG 9239 || |||| ||||| |||||| |||| | |||||||| || | |||||| Sbjct 173430345 GTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACC 173430286 Query 9240 ATGCTGCGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGAT 9299 ||||| || || ||| ||||||| |||||| || || | | | | |||||| Sbjct 173430285 ATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGAT 173430226 Query 9300 GCGCTCTACGACAGCATCGCGATGCGCGCCTTCGC--GGGCATCGACCTGGCGCGCGAGA 9357 || || ||||| | | | | ||||| || || || ||| ||||| ||| Sbjct 173430225 GCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTTATC--CCTGGATAGCGC-- 173430170 Query 9358 ACGTGCCGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGA 9417 | |||||||| |||||| | |||| ||||| | |||||||| |||| |||| Sbjct 173430169 -CTTGCCGGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGG 173430111 Query 9418 CGCGAAAGCTGTTCGACGAGATCGGCATCGA--GTTGTGCGAGCGCGGGC-TGATGATGA 9474 | || | ||||| | ||| |||| | || ||| || ||| | ||||||| Sbjct 173430110 CCCGCCAATTGTTCAAGACCATCA--ATCGCTGGCTGGCCGAA-GCAGGCGTCATGATGA 173430054 Query 9475 AGGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCG 9534 ||||||| |||| ||||| || ||| | ||||| | || || |||||| | Sbjct 173430053 CTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAG 173429994 Query 9535 GGAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCA 9594 | || || || ||||||||||||||||| ||||| ||||| | ||| | || |||| Sbjct 173429993 AGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCA 173429934 Query 9595 TGAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGG 9654 |||||||||| | || ||||| ||| | || ||| || ||| |||||||||| | Sbjct 173429933 TGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCG 173429874 Query 9655 CGGCCAACGAGC 9666 |||||||||||| Sbjct 173429873 CGGCCAACGAGC 173429862 >seq80 Length=184226339 Score = 138 bits (152), Expect = 3e-28 Identities = 330/492 (67%), Gaps = 13/492 (3%) Strand=Plus/Plus Query 9180 GTGATCGGGCCGTATTACCCGAAGGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACGG 9239 || |||| ||||| |||||| |||| | |||||||| || | |||||| Sbjct 157607283 GTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTATCCGCTGGAAACC 157607342 Query 9240 ATGCTGCGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGAT 9299 ||||| || || ||| ||||||| |||||| || || | | | | |||||| Sbjct 157607343 ATGCTACGCATTCACTGCATGCAGCATTGGTACAACCTGAGCGATGGCGCGATGGAAGAT 157607402 Query 9300 GCGCTCTACGACAGCATCGCGATGCGCGCCTTCGC--GGGCATCGACCTGGCGCGCGAGA 9357 || || ||||| | | | | ||||| || || || ||| ||||| ||| Sbjct 157607403 GCTCTGTACGAAATCGCCTCCATGCGTCTGTTTGCCCGGTTATC--CCTGGATAGCGC-- 157607458 Query 9358 ACGTGCCGGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGA 9417 | |||||||| |||||| | |||| ||||| | |||||||| |||| |||| Sbjct 157607459 -CTTGCCGGACCGCACCACCATCATGAATTTCCGCCACCTGCTGGAGCAGCATCAACTGG 157607517 Query 9418 CGCGAAAGCTGTTCGACGAGATCGGCATCGA--GTTGTGCGAGCGCGGGC-TGATGATGA 9474 | || | ||||| | ||| |||| | || ||| || ||| | ||||||| Sbjct 157607518 CCCGCCAATTGTTCAAGACCATCA--ATCGCTGGCTGGCCGAA-GCAGGCGTCATGATGA 157607574 Query 9475 AGGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCG 9534 ||||||| |||| ||||| || ||| | ||||| | || || |||||| | Sbjct 157607575 CTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAGAACAAAG 157607634 Query 9535 GGAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCA 9594 | || || || ||||||||||||||||| ||||| ||||| | ||| | || |||| Sbjct 157607635 AGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCACTTTGGCA 157607694 Query 9595 TGAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGG 9654 |||||||||| | || ||||| ||| | || ||| || ||| |||||||||| | Sbjct 157607695 TGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTCACCACCG 157607754 Query 9655 CGGCCAACGAGC 9666 |||||||||||| Sbjct 157607755 CGGCCAACGAGC 157607766 >seq1 Length=282763074 Score = 120 bits (132), Expect = 7e-23 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 9468 ATGATGAAGGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAG 9527 ||||||| ||||||| |||| ||||| || ||| | ||||| | || || ||| Sbjct 162985174 ATGATGACTCAAGGCACCTTGGTCGATGCCACCATCATTGAGGCACCCAGCTCGACCAAG 162985115 Query 9528 AACGCCGGGAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTAT 9587 ||| | | || || || ||||||||||||||||| ||||| ||||| | ||| | Sbjct 162985114 AACAAAGAGCAGCAACGCGATCCGGAGATGCATCAGACCAAGAAAGGCAATCAGTGGCAC 162985055 Query 9588 TTCGGCATGAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTC 9647 || |||||||||||||| | || ||||| ||| | || ||| || ||| ||||| Sbjct 162985054 TTTGGCATGAAGGCCCACATTGGTGTCGATGCCAAGAGTGGCCTGACCCACAGCCTGGTC 162984995 Query 9648 ACCACGGCGGCCAACGAGC 9666 ||||| ||||||||||||| Sbjct 162984994 ACCACCGCGGCCAACGAGC 162984976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119032250084580