Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq206 111 1e-19 seq297 98.7 6e-16 seq174 96.9 2e-15 seq80 84.2 1e-11 >seq206 Length=52716770 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36640659 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36640600 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36640599 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36640540 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36640539 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36640480 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36640479 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36640451 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36640887 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36640828 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36640827 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36640768 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36640767 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36640708 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36640707 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36640679 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36641343 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36641284 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36641283 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36641224 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36641223 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36641164 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36641163 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36641135 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36641571 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 36641512 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36641511 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36641452 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36641451 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36641392 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36641391 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36641363 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36641799 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36641740 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36641739 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36641680 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36641679 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36641620 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36641619 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36641591 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36642027 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 36641968 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36641967 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36641908 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36641907 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36641848 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36641847 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36641819 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36642255 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36642196 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36642195 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36642136 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36642135 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36642076 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36642075 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36642047 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36642483 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36642424 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36642423 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36642364 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36642363 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36642304 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36642303 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36642275 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| || || || ||| | || |||| ||| Sbjct 36641115 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGACAGGGTGCGGCCATCTTCC 36641056 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36641055 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36640996 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36640995 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 36640936 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||||||||||||||| Sbjct 36640935 CCTGTCAGGGTCTTCACAAAGATCTGCAT 36640907 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 36640431 ACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGGCCATCTTCC 36640372 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||||||||||| Sbjct 36640371 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 36640312 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || ||| || || | ||| ||||| || Sbjct 36640311 ATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTA 36640252 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || ||||||||||||||||| Sbjct 36640251 CCAGTTAAGGTTTTCACAAAGATCTGCAT 36640223 >seq297 Length=62275575 Score = 98.7 bits (108), Expect = 6e-16 Identities = 142/196 (72%), Gaps = 7/196 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||| |||| |||| ||||| || ||| | || |||| ||||||||||| |||||||| Sbjct 30819953 TCTCTCTGGGTGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAAG 30820012 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||||| | || || | ||| |||| ||||| ||||| || Sbjct 30820013 ATCAGTCTCTGCTGGTC-AGGGGGACGACTTCCATGTCCTGGATCTTGGCCTTGAC--AT 30820069 Query 34911 GCTATCGAT--TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | ||||| |||| || ||| || || | || ||||| || ||| | || ||||||| Sbjct 30820070 --TCTCGATGGTCACTGGACTCGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCA 30820127 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 30820128 CGAAGATCTGCATGTT 30820143 >seq174 Length=112626471 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 48881476 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 48881417 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||| || || ||||| || ||| Sbjct 48881416 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 48881357 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 48881356 TCGATGGTGTCACTGGGCTCCACCTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 48881297 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 48881296 AAGATCTGCAT 48881286 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || ||| | || |||| |||||||| || |||||||| Sbjct 48881704 TCTTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 48881645 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||| || || ||||| || ||| Sbjct 48881644 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACGTTC 48881585 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 48881584 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 48881525 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 48881524 AAGATCTGCAT 48881514 >seq80 Length=184226339 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| |||| ||||| || ||| | || |||| ||||||||||| || | |||| Sbjct 171061642 CTTTCTGGATGTCGTAGTCTGACAGGGTGCGGCCATCCTCCAGCTGTTTGTCGTCGAATA 171061701 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || | || ||||| | || || || |||||||| ||||| |||| Sbjct 171061702 TCAGCCTCTGGTGGTC-AGGGGGACGCCTTCCTTGTCTTGGATCTTGGCCTTGATATTGT 171061760 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 |||| | |||| || || || || | || ||||| || || || || |||||||| | Sbjct 171061761 CTATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGA 171061820 Query 34972 AGATCTGCATATTCGT 34987 |||||||||| || || Sbjct 171061821 AGATCTGCATGTTGGT 171061836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629821569240