Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_015456.1 Length=50661 Score E Sequences producing significant alignments: (Bits) Value seq572 1103 0.0 seq473 746 0.0 >seq572 Length=2924 Score = 1103 bits (1222), Expect = 0.0 Identities = 711/775 (92%), Gaps = 2/775 (0%) Strand=Plus/Minus Query 213 TAATTATATTGTAACAGCTGTGTATAGCTGTCTTACATTGTCTAGCGTACTGTTGGCATA 272 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 2876 TAATTATATTGTAATAGTTGTGTATAGCTGTCTTACATTGTCTAGCGTACTGTTGGCATA 2817 Query 273 TTTCTATCTGCATGTTTATATATACAGTACTTTTTTGG-GAGCTATATATTTCTATAGTG 331 |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| Sbjct 2816 TTTCTATCTGCATGTTTATATATACAGTACTTTTTTTGAGAGCCATATATTTCTATAGTG 2757 Query 332 ACTCTATACAGCTAGACAAATGTTACACGGCTTAAAATTGGCTCTCAGGCGTTGACGTAT 391 || || ||||||||||||||||||||||||||||||||||||| ||||| ||||| | Sbjct 2756 GCTATAGACAGCTAGACAAATGTTACACGGCTTAAAATTGGCTCGCAGGCATTGACAGCT 2697 Query 392 CTGCATTGCGCTGTCACAATGGCAATTGTTGACACGTTATGACACCATTTACACACGAAT 451 || ||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2696 CTACATCGCGATGTCACAATGGCAATTGTTGACACATTATGACACCATTTACACACGAAT 2637 Query 452 AGACAAAGAGGTTATATTATGAGCAATACCAATCAGGAATTAAAAATCACCGACATGATT 511 ||||||||||| ||||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 2636 AGACAAAGAGGATATATTATGAGCAATACCAGTCAGGAGTTAAAAATCACCGATATGATT 2577 Query 512 CGCCTAACCTGCGACGCAATGTATCGCGACAAGGGCATGAGTGAGTTCTCTTTCGTGGCT 571 |||||||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||| Sbjct 2576 CGCCTAACCTGCGATGCAATGTACCGCGACAAAGGCATGAATGAGTTCTCTTTCGTGGCT 2517 Query 572 GATGATATGGCCCTGGAAGGCGCGCGATTCTATTTCCGCAATCAGGATGTAAGCGATAGC 631 |||||||||||||| || | |||||||||||| ||||| | ||||| ||||| ||| | Sbjct 2516 GATGATATGGCCCTCGAGGCCGCGCGATTCTACTTCCGTGACCAGGAGGTAAGTGATGAC 2457 Query 632 GATCTTGAGTCTGCCGCTGCCGGATGGGTGGACCAGAACCAGGGGGAGGTAGAGAAGCGA 691 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2456 GATCTTGAATCTGCCGCTGCCGGATGGGTGGACCAGAACCAGGGGGAGGTAGAGAAGCGA 2397 Query 692 TTCAAGTCTGCTTTCATCACTCCGATCATTACCAGGCACTTCTGCAAGTATGGCAAGGTA 751 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2396 TTCAAGTCCGCTTTCATCACTCCGATCATTACCAGGCACTTTTGCAAGTATGGCAAGGTG 2337 Query 752 GCAAAGGTGAAGGTAGGCCGAAATGACGCAGCAATCACAATGATAACGGTTATCGTTACA 811 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 2336 GCAAAGGTGAAGGTAGGCCGGAATGACGCTGCAATCACAATGATAACGGTTATCGTTACC 2277 Query 812 GACGAAGAGGTTCCTGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGACTGC 871 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2276 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 2217 Query 872 CTGGATTCTTTTGACGTTGATGTTAGTAAGCTGGGCGATAGTGAACTGATGGTTCGTGAT 931 |||||||| |||| |||||||| | || |||| ||||| ||| ||||| |||||| Sbjct 2216 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGAC 2157 Query 932 GTAAATGAGATCGTGCGCCAGATGAAAGCGCATATCGAAAAGTGCGGACTGTGAG 986 ||||| |||||||| | ||||||||||||||||||||||||||| ||||||| || Sbjct 2156 GTAAACGAGATCGTTC-CCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAG 2103 >seq473 Length=26706 Score = 746 bits (826), Expect = 0.0 Identities = 518/584 (89%), Gaps = 4/584 (1%) Strand=Plus/Minus Query 49667 TCTCTCCGGCATGACAAAATCGTCCGAGGTCCAAAGGCACGTCTTTTTCGGGTAAGCATC 49726 |||||||||||| || || ||||| |||||||| || || ||||| |||||||||||||| Sbjct 26706 TCTCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATC 26647 Query 49727 GCGCGGCGCAATATACATAGGGAACCAGGGATGTGAGTCATTCTCAGGAAGGTAGCCGCC 49786 ||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| Sbjct 26646 GCGCGGCGCGATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCC 26587 Query 49787 ATACTCCCAGGGATTGAATGAGTGATCTGGTTTTCTCCAGGCAGATGACAGGACGCTAAC 49846 |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| || Sbjct 26586 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCAC 26527 Query 49847 CGGATTCTCAATGATGTAGGTCACGCCCAGGGCATCGCCAATATTCGCAGCAATCCGTGC 49906 |||||||||||| ||||| |||||||||| | ||||||||| ||||| ||||| || || Sbjct 26526 CGGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGC 26467 Query 49907 GGTTGCAACAGCCTTCTCCTGGAATAACGGATCGCGCTCACGCTTACTTGCAAAGTGCGC 49966 || || ||||| ||||||||||||| |||||| || |||||||| || ||||| || || Sbjct 26466 AGTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATG-GC 26408 Query 49967 G-GCACCACTAACAGCCAGGTCGGTGCATGGAGGAAATGCCATGATGAAATCTGGCTTGC 50025 | |||||||||||||| ||||| ||||||||| | || ||||| || ||||| || ||| Sbjct 26407 GAGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGT 26348 Query 50026 CATACACACCCGCGATCGCATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 50085 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 26347 CATACACACCCGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACT 26288 Query 50086 CAATATTCGGATGCTCTACCCGGGCGTTGTACTTTGCATAATCTCCGTGATCGGCCCCGT 50145 |||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| Sbjct 26287 CAATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGT 26228 Query 50146 CAAAGTTGAAGCACATTACCTTATGACCTCGCTTAGCCAGTTCATGACCAGCAAGGCCGG 50205 |||||||||||||||| |||||||||||| |||| ||||||||||| |||||||| |||| Sbjct 26227 CAAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGCCAGCAAGACCGG 26168 Query 50206 AGCCATCGAATAATGACCAGATTAATTTCATTTCGTTACCTCCT 50249 | || ||||||| |||||| |||||||||||| || || |||| Sbjct 26167 AACCGTCGAATAGTGACCAAATTAATTTCATT--GTGACTTCCT 26126 Score = 228 bits (252), Expect = 3e-55 Identities = 154/171 (90%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 50454 TCCTCTGATTGGTTGATGTGATGAATCATACCCTGCCAACATGGATAAGTCGTTAGCAAA 50513 || ||||||||||||||| ||| |||||||| |||| ||| ||||||||||||| Sbjct 26126 TCTTCTGATTGGTTGATGGCCCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCAAA 26067 Query 50514 AAATGCTATTCCAATAGTTGCTCATTATTCCATCAATACTGGAATAGTTGGAATAATTTT 50573 || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 26066 AA-TGCTATTCCAATAATTGCTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTT 26008 Query 50574 GATTGTGATTGATTGCGAATGATGAAACGTGATTATTGCATGATGTGCAAC 50624 |||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 26007 GATTGTTATTGATTGCGAATGATGAAACGTGATTATTGCATGGTGTGCAAC 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161991762891330