Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq301 84.2 3e-11 >seq301 Length=56205956 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 ||||| |||||||| || || | ||| |||||||| ||| ||||||||||| || | Sbjct 2486034 GGTAATCCTTCATGGTGCACATGACACGTGTATCTCTGCTCCTCTCCAGAAGGAACTATC 2485975 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | || ||||||| || || || ||||| || ||||| | || ||| | |||| | Sbjct 2485974 ACTACTGCCCATTTCTGGAAGGTTCCATCCCCTGCTGGCCTGGTGTCTGGCAGCTCCATG 2485915 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 || || | || | || || || | | ||| || | | || ||||| || || || Sbjct 2485914 TCCTGGGTGTGGTTTTTGCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCTGGGTAGAAG 2485855 Query 14352 CCCAAAGCCCAGCACC 14367 || || |||||||||| Sbjct 2485854 CCTAAGGCCCAGCACC 2485839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629275687931800