Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq297 226 3e-54 seq117 89.7 6e-13 >seq297 Length=62275575 Score = 226 bits (250), Expect = 3e-54 Identities = 588/887 (66%), Gaps = 16/887 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | || || || || ||||| | || || || ||||| |||||||| Sbjct 25392878 CATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTC 25392819 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 |||||| ||||| ||||| || ||||||||||| | || | || | || | Sbjct 25392818 TAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACC 25392759 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATAG 37049 | ||| || |||||| || || ||||| || ||||| | ||| | || || Sbjct 25392758 CAGCTCCAGCATAAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAA-- 25392701 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 || || || || || || || || | || ||| ||| ||| | | | |||| | || Sbjct 25392700 TTCATCCCGATGAGCTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCT-CTATCCTGAC 25392642 Query 37109 AGCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATTTTAAATAT--TT 37165 || | ||| ||| | | | ||| ||| | ||| | | | | | || Sbjct 25392641 CGCGTTGGTAATTATTT---CTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCTT 25392585 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || ||||| ||||| || | ||| |||||||| || || | |||||| || Sbjct 25392584 GAACATCAGGCAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGA 25392525 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | || | ||| || | ||| ||||||| ||||||||| || Sbjct 25392524 AAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACC 25392465 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||||||||| || ||||| || || || || || |||| ||| || | || | Sbjct 25392464 AGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTC 25392405 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || |||||| | ||| || ||||| || ||||| ||||| || Sbjct 25392404 TTTGTCCCCAATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTC 25392345 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || || |||||| | | | |||||| |||| | || ||||| ||||| || | Sbjct 25392344 AATGGCGTTGAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAG 25392285 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||| |||||||| ||||| || || || || || || || || ||||| ||||| | || Sbjct 25392284 ACTGTACATTTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGC 25392225 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 || | | |||||| || | ||| | || | ||||| ||||| ||||| ||||| Sbjct 25392224 CTCTGTGACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATC 25392165 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--ATTTGATAAT 37643 ||| || |||||||| || ||||||| |||||||||||| ||||| ||| | | Sbjct 25392164 ACTCGCCGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGA-- 25392107 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCC 37703 || ||| | | |||||| || || | || || || || | |||||||| ||| Sbjct 25392106 GCTTCCCAGTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCC 25392047 Query 37704 AATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAA 37750 || || |||||| ||| ||||||| | || || ||||| Sbjct 25392046 TCAGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAA 25392000 >seq117 Length=147991367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | ||||| ||||| || | || ||||| | || | ||| || Sbjct 43887777 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCCGGCATCAGTCCCCGTTTCTTG 43887718 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| || || || || || Sbjct 43887717 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACCGCAGCGAAGGCC 43887658 Query 37320 ACAA 37323 |||| Sbjct 43887657 ACAA 43887654 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | || || || || ||||| | || || || ||||| |||||||| Sbjct 43889470 CATTACTCCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTC 43889411 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| ||||| ||||| || ||||||||||| Sbjct 43889410 TAGTGAAATATTCTCCATGAAGTCAAATGGATT 43889378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592309729218200