Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq166 105 5e-18 seq31 82.4 6e-11 >seq166 Length=122095297 Score = 105 bits (116), Expect = 5e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| ||||| ||||||||||| || || || || |||||||| Sbjct 121928285 CATATCTTTGTAGTCTGCTCCAAAATGTCTCCACTGGAATCCATAAACTGGGCCCAGGTC 121928344 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||| || | | | ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 121928345 TCCTTCCTGTCGGGCAGAGAATCCCAAGCTGTCCAAAAAGTCTCGGGACCCATTGGCATC 121928404 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || | || ||||| ||| || ||||| | |||||||| || Sbjct 121928405 CCAAATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGAGCC 121928452 >seq31 Length=266435125 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 21934640 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGGA 21934581 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || |||||||| ||||||| ||||| || ||| Sbjct 21934580 ATGGAGAACCAGGTTTTCCTACCCATAATCACCAGATTCTGTTTACCT 21934533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408612844074215