Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-12 seq31 86.0 5e-12 >seq1 Length=282763074 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | | | | |||| Sbjct 154824816 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AGACTACAGCCATCT 154824761 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||| ||| ||||| ||||| | ||| ||||| | || || ||||| ||||| Sbjct 154824760 TCCAGCTGCTAACCAGCAAAGATCAATCTCTGCTGATCAGAGGGGATTCCTTCCTTATCC 154824701 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || || |||||| ||||| |||||| || | ||| Sbjct 154824700 TGGATCTTGGCCTTTACATTTTCTTTAGTGTCTGAGGGTTC 154824660 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||||||||| || ||||| || ||||| || | | | | | |||| Sbjct 154914920 AACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTC----AGACTACAGCCATCT 154914865 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||| ||| ||||| ||||| | ||| ||||| | || || ||||| ||||| Sbjct 154914864 TCCAGCTGCTAACCAGCAAAGATCAATCTCTGCTGATCAGAGGGGATTCCTTCCTTATCC 154914805 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || || || |||||| ||||| |||||| || | ||| Sbjct 154914804 TGGATCTTGGCCTTTACATTTTCTTTAGTGTCTGAGGGTTC 154914764 >seq31 Length=266435125 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA-TCGTCCAATT 101324 |||||||||||| | ||||| | ||||| | | ||| | || | || | | Sbjct 11072059 ATGAAGGGTAGACTTCTTTTGAAAGTTGTAGCAAGACAAAGTATGGCCATTTTTCTAGCT 11072118 Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 ||||||| ||||| || || | ||| |||||||| ||| | ||||| ||||| || || | Sbjct 11072119 GCTTACCAGCAAAGATTAACCTCTGCTGATCGGGAGGAGTTCCTTCCTTATCCTGGATCT 11072178 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGA-CGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 | |||||| |||||| |||||| || ||||| | | || |||| || || || Sbjct 11072179 TGGTCTTTACATTTTCTATAGTGTCCGAGGGTTTCAAACTTGAGCGTGATGGTCTTCCCC 11072238 Query 101444 GTTAAAGTTTTTACAAATATCTGCAT 101469 || | || || ||||| |||||||| Sbjct 11072239 GTAAGGGTCTTCACAAAAATCTGCAT 11072264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273787690935