Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq97 105 5e-18 seq206 87.8 1e-12 seq1 87.8 1e-12 seq312 82.4 6e-11 >seq97 Length=173707219 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | || ||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 138628756 CGCCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 138628815 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || |||||||||||||| ||||| |||| | ||| ||||| | | Sbjct 138628816 ACAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAG 138628875 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||||| |||||| | | || || || | || | Sbjct 138628876 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 138628935 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | ||| || || || || || | || || |||||||||||||||||| Sbjct 138628936 CCTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCATCGTG 138628988 >seq206 Length=52716770 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||| || || ||| ||| || || || ||||| ||||| Sbjct 36641590 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 36641531 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 36641530 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641471 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 36641470 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641411 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 36641410 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 36641363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||| || || ||| ||| || || || ||||| ||||| Sbjct 36642046 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 36641987 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 36641986 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641927 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 36641926 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36641867 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 36641866 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 36641819 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | |||| || || ||| ||| || || || |||||||| || Sbjct 36641134 GCCCCCTCTGAGGCGAAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGA 36641075 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 36641074 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36641015 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 36641014 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36640955 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 36640954 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 36640907 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||| || || ||| ||| || || || ||||| || || Sbjct 36642502 GCCCCCTCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 36642443 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| || || | ||| Sbjct 36642442 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGG 36642383 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| |||||| || ||| | | | || | ||| || Sbjct 36642382 GATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTTTCAATGGTGTCACTGGGCTCGAC 36642323 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 36642322 CTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 36642275 >seq1 Length=282763074 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 9053 CCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCT 9112 |||||| ||| ||| ||||| || | || ||||| | || || |||| ||| || | Sbjct 48565225 CCTCTA--AGTCTGG-ATAAAGAATCCGCTCCCAAATGAGCTGCGCGATCCGGTCACCTT 48565281 Query 9113 TATTCACGACAAAGT-CTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTG 9171 | ||||| | || | || | | || |||||||||||| || || || || || || Sbjct 48565282 TTTTCACCTCGAACTTCTCTTTTCCAAA-ATTGAACAGCACGACGCCGACATTTCCTCTA 48565340 Query 9172 TAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAG 9231 ||||| || || || ||||| || || || || ||||||||||| || || | ||||| Sbjct 48565341 TAATCTTCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACAGCCAAGCCAGAA 48565400 Query 9232 CGGGGCGCGATTCGACCGTAGCATCC 9257 || || || | || |||||||| || Sbjct 48565401 CGTGGAGCCACTCTTCCGTAGCACCC 48565426 >seq312 Length=159970021 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||||| ||| ||| || ||| |||||||| ||||| ||||| | | | || | || Sbjct 72456627 CAGCACCAGATGGAGCATGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 72456686 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| ||| ||||| |||| | ||| | ||| | |||| || |||| || Sbjct 72456687 TTCCAGCTGCTCACCAGCAAAGATCAACCTCTGCTCATCAGGAGGAATTCCTTCCTCATC 72456746 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || ||||| | || |||| | ||| | || Sbjct 72456747 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCGAGCGTGAGGGT 72456806 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCG 48768 || || || | || || |||||||||||||||| Sbjct 72456807 CTTCCCTGTAAGGGTCTTCACAAAAATCTGCATCG 72456841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933166243465