Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019419.2 Length=43457 Score E Sequences producing significant alignments: (Bits) Value seq473 93.3 1e-14 >seq473 Length=26706 Score = 93.3 bits (102), Expect = 1e-14 Identities = 236/354 (67%), Gaps = 4/354 (1%) Strand=Plus/Plus Query 18304 CCGGATATCATTTATGCATTCCCGCCGTGTACGGATCTGGCGGTGAGTGGCGCGCCCGCT 18363 |||||| | ||| || |||| || || || || || || || ||||| || | | | Sbjct 26353 CCGGATTTTATTATGGCCTTCCATCCATGCACTGACCTTGCTGTTAGTGGTGCTCGCCAT 26412 Query 18364 TTCCCGCGCAAACGCGCCCGCGACCCTGCCTTCCAGCTTAAGGCGGTGCGC-ACCGCGAA 18422 || | |||| || | || || || |||||| || || || ||| || || Sbjct 26413 TTTGCCAGCAAGCGTGAACGTGATCCGCTATTCCAGGAGAAAGCTGT-CGCTACTGCCCG 26471 Query 18423 GATTGCAGCTTACCTGGGTGATTTCTTTGAAGTGCCGTATATGATTGAGAATCCGCGCAG 18482 ||||| || || | || ||| | | | ||| | || || |||||||||||| || Sbjct 26472 TATTGCCGCGAACATTGGCGATAGCATGGGCGTGACTTACATAATTGAGAATCCGGTGAG 26531 Query 18483 CGTGCTCTCCACTCAATGGCGTAAGCCGGACCACTCGTTTGACCCGTGGGAGTATGGCGG 18542 ||| || || || |||| | || || | ||||| || | || |||||||||||||| Sbjct 26532 CGTCCTGTCATCTGCATGGAGAAAACCAAATCACTCCTTCAATCCCTGGGAGTATGGCGG 26591 Query 18543 ATATCTGCCGGAGGGTGACGTACACCCGCTCTTCCCGGAATACATCAACGCC-CGCGATT 18601 ||||| || ||| ||||| || || |||||| || ||| |||| |||||| Sbjct 26592 CTATCTTCCTGAGAATGACGCGCATCCCTGGTTCCCGATGTATATC-GCGCCGCGCGATG 26650 Query 18602 CATATCCGAAGCTGACCTGCTTATGGACCGGCAACGGCTTCCGTATGCCAGAGA 18655 | || |||||| ||| || | |||||| ||| |||| |||||| |||| Sbjct 26651 CTTACCCGAAGAAGACTTGTCTGTGGACCTCTGACGACTTCGTTATGCCGGAGA 26704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138939224324490