Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq297 230 4e-55 seq258 150 3e-31 seq1 91.5 3e-13 seq97 89.7 1e-12 >seq297 Length=62275575 Score = 230 bits (254), Expect = 4e-55 Identities = 561/844 (66%), Gaps = 17/844 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || |||| ||||||||||||||||| || || || | || || ||||| Sbjct 25392863 CTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTTTTTCCTTCTAGTGAAATATTCTC 25392804 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| || || || | || | | | | | |||| || |||||| Sbjct 25392803 CATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGTTAAAACCCAGCT---CCAGCAT 25392747 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || || |||||||||| | ||| | |||| ||||| || ||||| Sbjct 25392746 AAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATCAAGGTGCAATTCATCCCGATGAG 25392687 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| |||| |||| |||||| ||||||| ||||||| || || | | || Sbjct 25392686 CTTCACAGGCAGGGCCTCTGTGAGGAACTCCTGCTCTATCCTGACCGCGTTGGTAATTAT 25392627 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || | ||| ||||| |||| |||||||||| | | || |||||| Sbjct 25392626 TTCTTTTACTCTCTGCTCCGAGGGCTTGTGTACCAGGTGCTTGA---ACATCAGGCAGGC 25392570 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | ||||| || || || | ||| || || | ||||| || || || || Sbjct 25392569 AAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGGCCCGG 25392510 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | |||| | ||||||||||| |||| || ||||| ||||| |||||||| || Sbjct 25392509 CATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCC 25392450 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC- 48314 || || || ||||| || | | ||||| | | ||| | ||||| |||| Sbjct 25392449 TTCTACCGCAGCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCCAATCCA 25392390 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | | ||| |||||||| ||||||||||| | || ||||| ||||| ||||| ||||| Sbjct 25392389 ACGCAAG-GCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTTGAAGA 25392331 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCT 48431 | | | | || | || || || || | | || || | |||||| | Sbjct 25392330 GATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACT---GTACATTT 25392274 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || || || ||||| || ||||| | |||||| || | Sbjct 25392273 CGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACTT 25392214 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | |||||| | |||| ||||| || |||||||||||||| ||||| || |||| Sbjct 25392213 GAACTTCTTGGCTAAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGCCGCAA 25392154 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT 48611 ||||||| || ||||| | ||||| | ||| | | | ||||| | |||| || Sbjct 25392153 AGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCAGTGCT 25392094 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | || ||| |||||||| || || ||||||| ||||| || ||||| |||| Sbjct 25392093 GAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 25392034 Query 48672 ACAT 48675 |||| Sbjct 25392033 ACAT 25392030 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 241390 CTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCG 241449 ||| ||||| | || | ||| || ||||| ||| ||||| || ||||| || ||||| Sbjct 26093485 CTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGCGCCACTTGCTCCCG 26093544 Query 241450 CAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTC 241509 || | | || ||| | ||||| || ||||| |||| |||||| |||||| || || Sbjct 26093545 TAGGAGGCCGGCAGTACTTGACAGCCCCGCGTTCTCAGCCTTGAGTGTCTTCACCTTGTC 26093604 Query 241510 CTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTT 241569 |||||| ||||||||||| ||||| || ||| |||||||||||||| |||| | ||| Sbjct 26093605 CTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCATTTGGTGGCCGCCAGCCTGTT 26093664 Query 241570 CCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 26093665 CCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 26093722 >seq258 Length=90668790 Score = 150 bits (166), Expect = 3e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | |||||| | ||| Sbjct 20485633 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCGGTGGACGCCAGC 20485692 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 20485693 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 20485752 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||||||||| || || | |||||| || || ||||| || ||||||||| Sbjct 20485753 TTGCGCTTGCGGCATTTGGAAGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 20485812 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||||||| ||||||||||| || ||| Sbjct 20485813 ATGCGTTCCTGCGTGTCCATGTCGATGGGCGAC 20485845 >seq1 Length=282763074 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | ||||| ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 167553503 GTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 167553444 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || ||| ||| || || |||||||||||||| |||| || ||||| Sbjct 167553443 TTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGGTGCCCGTCTC 167553391 >seq97 Length=173707219 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| || ||||| || | ||||| |||| ||| Sbjct 114012557 TTCACTTTTTCCTCTAGCCGGGCGATCCGCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 114012616 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 114012617 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 114012676 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 114012677 ATGGGGGAC 114012685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931521679827200