Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq297 176 8e-39 seq232 100 5e-16 seq1 87.8 3e-12 seq129 84.2 4e-11 >seq297 Length=62275575 Score = 176 bits (194), Expect = 8e-39 Identities = 411/607 (68%), Gaps = 31/607 (5%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||||||||| ||| | ||| ||||| ||||| ||| | || Sbjct 25392018 GATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGAC 25392077 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTT---- 25587 || ||||||| || | |||| | ||||| | ||| || ||| |||||| Sbjct 25392078 CTTTCCAAGGATATTCAGCACTGGGAAGCTCTGAAACCA--GATGAGAGACATTTTATAT 25392135 Query 25588 CTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGC 25647 |||| || | |||| |||||||| || |||||| ||||| || ||||| || Sbjct 25392136 CTCATGTTC----TGGCCTTCTTTGCGGCGAGTGATGGCATAGTCAATGAGAACTTGGTG 25392191 Query 25648 GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 ||| |||| | | ||||| || | |||||| |||||||| || ||||| || Sbjct 25392192 GAGCGATTTAGCCAAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATT 25392251 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| || || | ||||| || |||| || || || || || ||||||| | Sbjct 25392252 GCCATGGAGAACATACACTCCGAAATGTA---CAGTCTCCTTATTGACACTTACATTAAA 25392308 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || ||||| || || ||||| ||| || || | | |||| | Sbjct 25392309 GATTCCAAAGAAAGAGAATATCTCTTCAACGCCATTGAGACAATGCCTTGTGTGAAGAAG 25392368 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| |||||| || ||||| ||| |||| ||||||| ||| || || Sbjct 25392369 AAGGCTGACTGGGCCTTGCGTTGGATTGGGGACAA--AGAG-GCTACGTATGGAGAACGA 25392425 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | || ||||| ||||| || || || ||||| || ||||| ||||| | || ||| Sbjct 25392426 GTTGTGGCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTC 25392485 Query 25942 TGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCA 25999 ||||||||| | | |||||| ||| |||||| ||| |||||||| || || || |||| Sbjct 25392486 TGGCTCAAG-AAACGGGGACTGATG-CCGGGCCTTACATTTTCCAATGAACTTATTAGCA 25392543 Query 26000 GGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA 26059 | || |||||||| ||| | || |||||||||||| | | || | ||| || | |||| Sbjct 25392544 GAGATGAGGGTCTGCACTGTGACTTTGCCTGCCTGATGTTCAAG---CACCTGGTACACA 25392600 Query 26060 AACCTTC 26066 | || || Sbjct 25392601 AGCCCTC 25392607 >seq232 Length=115493446 Score = 100 bits (110), Expect = 5e-16 Identities = 178/256 (70%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 221954 TCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTC 222013 || |||| || || || |||||||||| || |||||| |||||||||||| | Sbjct 76910633 TCGAACTCCTCTCCCTAAACCTCGTCCAGACCAGGACACTCATTGGGACACATCAGTGAC 76910574 Query 222014 CAGTGCTTGTT-GTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 | || || ||| |||| | || | || ||||||||| | ||||||| || || || Sbjct 76910573 CGGTCCTGGTTAGTCTCT-ACTCGCTTCATGAAGAGATTTGGGATCCGAAGTGCGAAGAA 76910515 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 |||||| | | |||| || ||| ||| |||| ||| ||| || | |||||||| Sbjct 76910514 GAGATCCCACGCTTGCTGTTCTTCCTTGCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAA 76910455 Query 222133 AATGTC-AG------CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||| || |||||| |||| ||| || | || | || || || ||||||| Sbjct 76910454 GATGTCTAGGTGGTTGGTGCCAAGGCTTCAGGTAAATAGCAAATGCCCCCGGGCGCTTGT 76910395 Query 222186 TGCCACCCTGATCCAC 222201 | ||||| |||||||| Sbjct 76910394 TTCCACCTTGATCCAC 76910379 >seq1 Length=282763074 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 ||||||| || || |||| |||| || |||||||| || ||||||||||||||||||| Sbjct 167553520 CCACCTCATCTTTACTGGTGTACTCTACTATCTCTGTGCACAGGTTGCTGCACTTGATGG 167553461 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| || || | ||| ||||||||||| | || Sbjct 167553460 TTCCCAGGTTCTGCTGGTTGCTCTTCCGGTTACAGGAGTCTTTGTAGAGCATGTATGGGG 167553401 Query 221850 CGCCAGTCTCCAGCTGAG 221867 ||| |||||| ||||| Sbjct 167553400 TGCCCGTCTCCGTCTGAG 167553383 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||||||||| || ||||||||||| || |||||||| | | ||||| || || Sbjct 167551396 CTTCATGAAGAGATCTGGGATCCACAGTGCAAAGAAGAGATCCCGCGCGCGCTGTTCTTC 167551337 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | ||| |||| ||| ||| || | ||||||||| ||||| |||||| |||||||| Sbjct 167551336 CTTGCCTGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCCAGGTGCCAAGGCTCCAG 167551277 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCT 222182 || | || | || || || |||| Sbjct 167551276 GTAAATAGCAAATGCCCCTGGGCGCT 167551251 >seq129 Length=145729302 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| |||||||| || || || || ||| || || ||||| || || |||| Sbjct 76759329 TGGTGGCCTTCGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCATTTGCTGCTATATTCT 76759270 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||| |||||| ||||| || || || |||||||||| Sbjct 76759269 GGCTAAAGAAGAGAGGCCTCATGCCTGGGCTGACTTTTTCAAATGAACTGATCAGCAGGG 76759210 Query 26003 ACGA 26006 | || Sbjct 76759209 ATGA 76759206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833711915200