Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq189 179 5e-40 seq80 116 5e-21 seq219 95.1 2e-14 >seq189 Length=90463843 Score = 179 bits (198), Expect = 5e-40 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 153769 AAAACTACACAAGAACCTTTAATTGTAACGTGGCAAAAGAAGAAAGCTGTAGGTCCAGAA 153828 ||||| || || ||||| || ||||| || ||||| || |||||||| ||||| |||||| Sbjct 60383308 AAAACAACCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCCGTAGGCCCAGAA 60383367 Query 153829 AATATGGCCACGTATAGCAAAGCCCACGGTGTAGTGCTTCAGCCCACATATAAAGATAGA 153888 || |||| ||| || ||||||||||| || || || |||||||||| || | ||| || Sbjct 60383368 AACATGGTCACTTACAGCAAAGCCCATGGGGTTGTCATTCAGCCCACCTACAGAGACAGG 60383427 Query 153889 ATTAATATAACCGAATTAGGTCTTTTAAACAGTAGTATAACGTTTTGGAATGCAACACTG 153948 || || || || || | || || || |||| || || || || ||||| |||| ||| Sbjct 60383428 ATAAACATCACTGAGCTGGGACTCTTGAACACAAGCATCACCTTCTGGAACACAACCCTG 60383487 Query 153949 GATGATGAAGGCTGTTATATGTGTCTGTTTAATATGTTCGGTTCTGGTAAGGTATCGGGA 154008 |||||||| || || || |||||||| || || ||||| || ||||| ||||| || || Sbjct 60383488 GATGATGAGGGTTGCTACATGTGTCTCTTCAACATGTTTGGATCTGGGAAGGTCTCTGGG 60383547 Query 154009 AC 154010 || Sbjct 60383548 AC 60383549 >seq80 Length=184226339 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 2652 TTATAGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGA 2711 ||| ||||||||||||||||||||||||| | ||| ||||||||||||||| | |||||| Sbjct 162941679 TTACAGAATTTCTTAAGCAGATACAAAGGGAGTTTTGATTACTGGATCGGCCTGCACAGA 162941738 Query 2712 GAATCATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 || || ||||| || || ||||| ||| | || || || || ||||||||||| || Sbjct 162941739 GAGTCCTCAGAGCACCCTTGGAAGTGGACAGACAACACTCAGTATAACTACTCGTATGT 162941797 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| ||| ||||||||||| | || | ||||||||||||| | || ||||||| Sbjct 162086790 AGAATTTCCTAAAGAGATACAAAGGGAGTTCAGGTTACTGGATCGGCCTGCATAGAGAAT 162086849 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 |||||| | | || ||||| ||| | || || || |||| ||| ||| ||| || Sbjct 162086850 CATCAGCAGACCCTTGGAAGTGGACAGACAACACTGCATATAACAACTTGTATGT 162086904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| ||| ||||||||||| | || | ||||||||||||| | || ||||||| Sbjct 162166776 AGAATTTCCTAAAGAGATACAAAGGGAGTTCAGGTTACTGGATCGGCCTGCATAGAGAAT 162166835 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 |||||| | | || ||||| ||| | || || || |||| ||| ||| ||| || Sbjct 162166836 CATCAGCAGACCCTTGGAAGTGGACAGACAACACTGCATATAACAACTTGTATGT 162166890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| ||| ||||||||||| | || | |||||||||||| | |||||||| | Sbjct 162183174 AGAATTTCCTAAAGAGATACAAAGGGAGTTCGGGTTACTGGATCGGTCTGCACAGAGAGT 162183115 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGTCTGAA 2775 ||||||| || || ||||| ||| | || ||||| || ||| ||| ||| || | | Sbjct 162183114 CATCAGAGCACCCTTGGAAGTGGACAGACAATACTCAGTATAACAACTTGTATGTTTCAC 162183055 Query 2776 TATTTT 2781 ||||| Sbjct 162183054 AATTTT 162183049 Score = 82.4 bits (90), Expect = 1e-10 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| |||| ||||||||||| | || | ||||||| |||| | |||||||| | Sbjct 162300895 AGAATTTCCTAAGGAGATACAAAGGGAGTTCAGGTTACTGGTTCGGTCTGCACAGAGAGT 162300954 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 |||||| || || ||||| ||| | || || || || ||| ||||||| || Sbjct 162300955 CATCAGCGCACCCTTGGAAGTGGACAGACAACACTGAGTATAACAACTCGTATGT 162301009 Score = 82.4 bits (90), Expect = 1e-10 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2656 AGAATTTCTTAAGCAGATACAAAGGAAATTTCGATTACTGGATCGGCATACACAGAGAAT 2715 |||||||| ||| ||| ||||||| | || | |||||||||||| | |||||||| | Sbjct 162443910 AGAATTTCCTAAAGAGACACAAAGGGAGTTCGGGTTACTGGATCGGTCTGCACAGAGAGT 162443969 Query 2716 CATCAGAACATCCGTGGAAATGGGCGGATAATACCACATACAACTACTCGTAAGT 2770 ||||| ||| || ||||| ||| | || || || |||| ||| ||| ||| || Sbjct 162443970 CATCATCACAGCCTTGGAAGTGGACAGACAACACTGCATATAACAACTTGTATGT 162444024 >seq219 Length=114033958 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 186439 ATTACCGCTCGCATGGCTCCTTCTTTGATTGTGTAGGTCTTAATTTTTTGAATCGGAATT 186498 ||||| |||| ||||||||| || ||||| ||||||||||| |||||||||| || | Sbjct 83200317 ATTACAGCTCTCATGGCTCCCTCCTTGATGGTGTAGGTCTTGATTTTTTGAACTGGCAGC 83200376 Query 186499 CGCTGGGTTCGTAAACTTACGCAGATGGTTTCGTGTAAAACTTCA 186543 |||||||||| ||| || || ||||| | || |||| |||||| Sbjct 83200377 CGCTGGGTTCTTAAGCTCACACAGATACTCTCTTGTAGGACTTCA 83200421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649291448990800