Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019724.1 Length=43741 Score E Sequences producing significant alignments: (Bits) Value seq473 82.4 2e-11 >seq473 Length=26706 Score = 82.4 bits (90), Expect = 2e-11 Identities = 236/356 (66%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 26418 TCTCGGGCATACGGAAGCCGTTTCCAGTCCATAAGCAGGTCAGCTTCGGATATGAATCGC 26477 |||| |||||| |||| ||| ||||| | || ||| |||||| || | ||||| Sbjct 26704 TCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATCGC 26645 Query 26478 G-GGCGTTGATGTATTCAGGGAAGAGCGGGTGTACGTCATCCTCTGGCAGATATCCGCCA 26536 | |||| ||| || ||||| || || |||||| ||| || ||||| |||||| Sbjct 26644 GCGGCGC-GATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCCA 26586 Query 26537 TACTCCCACGGGTCAAACGAGTGGTCCGGCTTACGCCACTGGGTGGAAAGCACGCTGCGC 26596 |||||||| || | || ||||| | || || | ||| | || || ||||| | Sbjct 26585 TACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCACC 26526 Query 26597 GGATTCTCAATCATATATGGCACTTCGAAGAAATCACCCAGGTAAGCTGCGATCTTCGCG 26656 ||||||||||| || || | ||| | | | ||| || | || || || || || Sbjct 26525 GGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGCA 26466 Query 26657 GT-GCGCACCGCCTTAAGCTGGAAGGCAGGGTCGCGGGCGCGTTTGCGCGGGAAAGCTGG 26715 || ||| || || || |||||| || || || | || || || || || ||| Sbjct 26465 GTAGCG-ACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTT--GCTGGCAAAATGG 26409 Query 26716 C--GCACCGCTAACCGCCAGATCCGTACACGGAGGGAATGCGTAAATGATATCCGG 26769 | ||||| ||||| || || || || || ||| |||| || ||| | |||||| Sbjct 26408 CGAGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGG 26353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139848014018130