Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_019725.1 Length=50552 Score E Sequences producing significant alignments: (Bits) Value seq473 1005 0.0 seq572 378 2e-100 >seq473 Length=26706 Score = 1005 bits (1114), Expect = 0.0 Identities = 672/751 (89%), Gaps = 2/751 (0%) Strand=Plus/Minus Query 2585 TCTCTCCGGCATGACAAAATCGTCAGAGGTCCACAGACAAGTTTTCTTCGGGTAAGCATC 2644 |||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 26706 TCTCTCCGGCATAACGAAGTCGTCAGAGGTCCACAGACAAGTCTTCTTCGGGTAAGCATC 26647 Query 2645 GCGCGGCGCAATATACATCGGGAACCAGGGGTGTGAGTCATTCTCAGGAAGATAGCCGCC 2704 ||||||||| |||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 26646 GCGCGGCGCGATATACATCGGGAACCAGGGATGCGCGTCATTCTCAGGAAGATAGCCGCC 26587 Query 2705 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCACGCAGACGACAGGACGCTTAC 2764 ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 26586 ATACTCCCAGGGATTGAAGGAGTGATTTGGTTTTCTCCATGCAGATGACAGGACGCTCAC 26527 Query 2765 CGGATTCTCAATGATGTAAGTCACGCCTA-GCTATCGCCAATGTTCGCAGCAATCCGGGC 2823 |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| ||||| Sbjct 26526 CGGATTCTCAATTATGTAAGTCACGCCCATGCTATCGCCAATGTTCGCGGCAATACGGGC 26467 Query 2824 AGTAGCGACAGCCTTCTCCTGGAATAACGGATCGCGTTCACGCTTGCTTGCAAAATGGCG 2883 |||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| Sbjct 26466 AGTAGCGACAGCTTTCTCCTGGAATAGCGGATCACGTTCACGCTTGCTGGCAAAATGGCG 26407 Query 2884 AGCGCCACTAACAGCCAGGTCAGTGCAAGGAGGGAAAGCCATAATGAAATCCGGCTTGCC 2943 ||| ||||||||||| ||||||||||| ||| |||| |||||||| |||||||| ||| | Sbjct 26406 AGCACCACTAACAGCAAGGTCAGTGCATGGATGGAAGGCCATAATAAAATCCGGTTTGTC 26347 Query 2944 ATACACACCAGAGATAGCATCACGCTCAAACGCTGCGTCAATGAACACGTTCACATACTC 3003 ||||||||| | ||| | |||||| || ||| | |||||||| |||||||||||||| Sbjct 26346 ATACACACCCGCGATCGTATCACGTTCGAACTTCTCATCAATGAAGACGTTCACATACTC 26287 Query 3004 AATGTTCGGATGCTCCACTCTGGCATTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 3063 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 26286 AATGTTCGGATGCTCTACCCTGGCGTTGTACTTTGCGTAATCTCCGTGATCGGCTCCGTC 26227 Query 3064 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATAACCAGCAATCCCGGA 3123 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 26226 AAAGTTGAAGCACATCACCTTATGACCTTGCTTTGCCAGTTCATGGCCAGCAAGACCGGA 26167 Query 3124 ACCGTCGAATAGCGACCAAATTAATTTCATCGTGACTTCCTCTTCTGATTGGTTTATGTG 3183 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 26166 ACCGTCGAATAGTGACCAAATTAATTTCATTGTGACTTCCTCTTCTGATTGGTTGATGGC 26107 Query 3184 CCGGACTATACCCGATCTACCCGACCGAGTCGTTAGCAAAAAATGCTATTCCAATAATTG 3243 ||| ||||||||| || ||| | ||||||||||||| ||||||||||||||||||||| Sbjct 26106 CCGAACTATACCCTGTCAACCTGGTCGAGTCGTTAGCA-AAAATGCTATTCCAATAATTG 26048 Query 3244 CTCATTATTCCATCAGTGCTGTAATAGGTGGAATAATTTTGATTGTGANNNNNNNNNNNN 3303 ||||||||||||||| | ||| |||||||||||||||||||||||| | Sbjct 26047 CTCATTATTCCATCAATACTGGAATAGGTGGAATAATTTTGATTGTTATTGATTGCGAAT 25988 Query 3304 NNNGAAACGTGATTATTGCATGGTGTGCAAC 3334 |||||||||||||||||||||||||||| Sbjct 25987 GATGAAACGTGATTATTGCATGGTGTGCAAC 25957 >seq572 Length=2924 Score = 378 bits (418), Expect = 2e-100 Identities = 290/339 (86%), Gaps = 5/339 (1%) Strand=Plus/Minus Query 4257 GATGAAGAGGTTCCGGTGAAGAAGCGCCGCAGCCGGAAAAA-GTTAGCTTGGCTGATTGC 4315 || ||||||||||| ||||||||||||||||| |||||||| |||||| |||| |||||| Sbjct 2276 GACGAAGAGGTTCCCGTGAAGAAGCGCCGCAGTCGGAAAAAAGTTAGCCTGGCCGATTGC 2217 Query 4316 TTG-ATTCATTTGATGTTGATGTTAGCAAGCTATCCGATAGCGAGTTAATGGTTCGTGAT 4374 || |||| |||| |||||||| |||| || | |||||||| || ||| |||||| Sbjct 2216 CTGGATTCGTTTGTGGTTGATGTGGGCAAACTGGCTGATAGCGAATTGATGACTCGTGAC 2157 Query 4375 GTGAATGAGATCGTGCGCCAGATGAAGGCACATATCGAAAAGTGTGGACTGTAAGGAGAG 4434 || || |||||||| | ||||||||| || ||||||||||||||||||||||||| | | Sbjct 2156 GTAAACGAGATCGTTC-CCAGATGAAAGCGCATATCGAAAAGTGTGGACTGTAAGAGGTG 2098 Query 4435 ATGAGTATGAGCAAAATTAAGCATGACGCCCTGAAAGGTATCTTGATGCGACTAAACCCA 4494 |||| |||||||| | ||| | ||||| ||||||||| | || |||| |||||| ||| Sbjct 2097 ATGACCATGAGCAAGA--AAGTACGACGCTCTGAAAGGTGTATTAATGCAACTAAATCCA 2040 Query 4495 GGCGAAGCATTCCAGCTTAACCCCGAGACGTTTGGATTCAATGGTGATTATCGTACAACC 4554 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2039 GGCGAAGCATTTCAGCTTAACCCCGAGACTTTTGGATTCAATGGTGATTATCGTACAACC 1980 Query 4555 TTCGAATTTGTAAGGTATGTAAAGAAAGAGTTTGGATTC 4593 ||||||||||| ||||||||||||| |||||||||||| Sbjct 1979 TTCGAATTTGTCCGGTATGTAAAGAAGGAGTTTGGATTC 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161642966846940