Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 271 9e-68 seq97 107 2e-18 >seq1 Length=282763074 Score = 271 bits (300), Expect = 9e-68 Identities = 654/985 (66%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| ||| |||| ||| || || || || ||| || ||||| || Sbjct 236582084 CAGATGTTCTTCCAAACACTGGAGGGCAAAGGGATCCACATCCATGTCAAACTTATTGGC 236582025 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || | || |||||| || ||| || || || ||||| || Sbjct 236582024 AAAAAAGTGGTGT---TTGCGCAGCATCCAGCTCAAGTCACCAACTCCAAAGACGCACAC 236581968 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | || || || |||| || || || | || || || | || || ||||| Sbjct 236581967 AGAGCGCACATGGACTCCACTGCACGGTGGATAAGGCGCGCCATTGGAAACATCGCCTTC 236581908 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||| |||||||| |||||||| || | || | |||||| || ||| || || | Sbjct 236581907 GAAGTATTGCCACTTGACAAACCTAGCGACAGCATTCATGTCAGACAAGTCATACTTATG 236581848 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | ||| || || | || || | || | ||||||||| ||| | Sbjct 236581847 GCTTGAGGGGAGAGA-ACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGAACT 236581789 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || |||||||| ||||||| | |||||||||||||| | || | | || Sbjct 236581788 CATCCGGGCTGTATGTGTCCTGTGCCCATTCCATGAACTTTTGAATATTTTTATTTTCCA 236581729 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG-- 160468 | || | || || || || || || || || |||||||| || || | || Sbjct 236581728 GCACATAGCCTACATATTCCCTAGTGACCACGAAATAGGCGCTGCCTGAAAAGAGAGGAG 236581669 Query 160469 -TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | || || |||| ||| | ||| | || ||||| | || | || | ||| | Sbjct 236581668 TTTTGAGTGGAGGCTGCG---CCTTGACAACTCCAGTGTTTGTCAGCTTCCCGTCCACAA 236581612 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587 || || ||| || |||||||| | ||||| || ||||| || || || || | Sbjct 236581611 CCGTGTATCGTTTTTTCCACCTCTCTTCCTTGTTGGGAGGCATCTTCTCAGTTTCCAGGC 236581552 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 |||| | || || || || |||| | |||| || || ||||| || || | || | Sbjct 236581551 TGTTTTCCCCTGTGAAGGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGGA 236581492 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || |||| || | || |||| ||||||||| || || ||| || ||||||| Sbjct 236581491 AATCCATACCACAAAGATTGATCAAGTACTTCCAGTTTGCATTCATTCTGTACAGGTCCT 236581432 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| || | || |||| || || |||||||| ||||| || || |||| | | Sbjct 236581431 TCATGCAGTTGAGGTCAGCCTTAACCCGACTCCAGGAGGCGTATACAACACTCTCCAACT 236581372 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||||||||| ||||| || || || | || ||| |||||| || || Sbjct 236581371 GGCTGGCCACAAAGACATTATCAAAGCAGGATGCAATGCCCTGCACCGCGGCTAAAAAGG 236581312 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || |||| ||||||||| | ||| || | ||||||||| |||||||||| Sbjct 236581311 ATTCCTCTGCTTTTCTGTCCACGTGAATGCAGTAGAAATTCTGAGGCATATAGATGGCCC 236581252 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || ||||||||||| | ||| || || || || || |||| Sbjct 236581251 TCAGGAGCCTGTCAAGCATGTCAATCTTATGATGAACCACTATGGAATATGCAATTGGAA 236581192 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | ||| || | | |||| | | | | || || || ||| |||| || | Sbjct 236581191 AGCCAACCTCTTCTTTAGTAAGGGGCTCCATAATATATTTGCGTGTCCTGATGAAGGAGG 236581132 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 | || ||||| |||||||| ||||| Sbjct 236581131 CGCAGTCCCGGGTCATGTTTATATA 236581107 >seq97 Length=173707219 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||||||| | | |||| || |||| | |||| | ||||| || |||| | | | Sbjct 40033755 AGATATTTTGCCAACTCACTGGGTGAGTTAAAATCTTCCACATGAATGAATGAATCAGCT 40033814 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| || || ||||| |||| || || ||||| | || | ||||| | || || Sbjct 40033815 GGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCAGGACAACAGGTACCGAACCAGCC 40033874 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCT 176411 || |||| ||||| |||||||| |||||| || ||||||||||||||||||| | Sbjct 40033875 AAAAATGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGAATTGAGTTTTCAAAGGAA 40033934 Query 176412 AAATAGAACTTACA 176425 | ||| || ||||| Sbjct 40033935 AGATAAAATTTACA 40033948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577212309445800