Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 >seq1 Length=282763074 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||||||||| || || ||||| ||||| ||||| || | |||||| |||||| Sbjct 167553382 TCTCAGACGGAGACGGGCACCCCATACATGCTCTACAAAGACTCCTGTAACCGGAAGAGC 167553441 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||| |||||| || || || ||||| || || |||||||| Sbjct 167553442 AACCAGCAGAACCTGGGAACCATCAAGTGCAGCAACCTGTGCACAGAGATAGTAGAGTAC 167553501 Query 76016 ACAGATAAGGATGAG 76030 || ||| |||||| Sbjct 167553502 ACCAGTAAAGATGAG 167553516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562478450400