Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq97 113 8e-20 seq1 95.1 2e-14 >seq97 Length=173707219 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| || || || | ||| Sbjct 138628773 AGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 138628832 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || || || || || ||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 138628833 TCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAATTCCTTCCTTATCC 138628892 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||| |||| ||||| || || | ||||| || || || || || Sbjct 138628893 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTC 138628952 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || ||||| || ||||| Sbjct 138628953 TTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| || || || | ||| Sbjct 159895308 AGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCT 159895249 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| || || || ||||| || || ||||| ||||||||||| ||||||| | ||| Sbjct 159895248 TCTAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGGAGTTCCTTCCTCATCC 159895189 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||| |||| ||||| || || | ||||| | || || || || Sbjct 159895188 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTC 159895129 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||| | || || |||||||| | ||||| Sbjct 159895128 TTCCCTATAAGGGTCTTTACAAAACTCTGCAT 159895097 >seq1 Length=282763074 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| || || || | | | Sbjct 255573166 AGCACGAGATGGAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCACCT 255573225 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || ||||| | || ||||| ||||||||||| || |||| ||||| Sbjct 255573226 TCCAGCTGCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAGTTTCTTCCTTATCC 255573285 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||| |||| ||||| || || | |||||||| || || || || Sbjct 255573286 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACTTCGAGCGTGATGGTC 255573345 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || ||||| || ||||| Sbjct 255573346 TTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 255573377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899643660375600