Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq297 125 1e-23 >seq297 Length=62275575 Score = 125 bits (138), Expect = 1e-23 Identities = 359/549 (65%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| ||| | ||| ||||||||| || | ||| || ||| || | Sbjct 25392574 CAGGCAAAGTCACAGTGCAGACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTAAGG 25392515 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | ||| || ||||| ||||| ||||| ||| || ||||||||| Sbjct 25392514 CCCGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 25392455 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || ||| ||||| || | | || ||| || | | | ||| | Sbjct 25392454 ATTCCTTCTACCGCA-GCGAAGGCCACAACTCGTTCTCCATACGTAGCCTCTTTGTCCCC 25392396 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| ||||| || | | | ||| || || |||| || || || Sbjct 25392395 AATCCAACGCAAGGCCCAGTCAGCCTTCTTCTTCACACAAGGCATTGTCTCAATGGCGTT 25392336 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || | || ||| |||||||||||||||| || |||||||| || | | | ||||| Sbjct 25392335 GAAGAGATATTCTCTTTCTTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTGTACAT 25392276 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 ||| || |||||| | ||||| || || || || | ||| || | | ||||| | Sbjct 25392275 TTCGGAGTGTATGTTCTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGAC 25392216 Query 18517 TTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||||| || | ||| ||||| || ||||| |||||||| ||||| || ||| | Sbjct 25392215 TTGAACTTCTTGGCT---AAATCGCTCCACCAAGTTCTCATTGACTATGCCATCACTCGC 25392159 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 || || || |||| ||||| || |||||| | |||| || ||| | ||| Sbjct 25392158 CGCAAAGAAGGCCAGAACATGAGATATAAAATGTCTCTCATCTGGTTTCAGAGCTTCCCA 25392099 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 | | ||||| || || || || || || || | |||||||| || | || || | Sbjct 25392098 GTGCTGAATATCCTTGGAAAGGTCCACCTCCTCGGCAGTCCAAAAGGAGGCCTCAGCTTT 25392039 Query 18694 TTTGTACAT 18702 |||||||| Sbjct 25392038 CTTGTACAT 25392030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863263278000