Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq97 120 6e-22 seq1 102 2e-16 seq312 96.9 7e-15 seq166 84.2 4e-11 >seq97 Length=173707219 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | | || | ||| | ||| | ||| ||| || || || || ||||| Sbjct 138628758 CCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 138628816 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| ||||| || |||||||||||||| || ||||| |||||||| || Sbjct 138628817 CAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 138628876 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||||| || || | ||| || Sbjct 138628877 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 138628936 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || | || || | ||| |||||||| Sbjct 138628937 CTCGAGCGTGATGGTCTTCCCTGTAAGGGTCTTCACAAAAATCTGCAT 138628984 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | | || | ||| | ||| | ||| ||| || || || || ||||| Sbjct 159895323 CCACCACGAAGTCTCAGCACGAGATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 159895265 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | || |||||||||||||| || ||||| |||||||| || Sbjct 159895264 CAAAGTACGGCCATCTTCTAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGAGG 159895205 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||| | ||| || || || |||||||| ||||| || || | ||| || Sbjct 159895204 AGTTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 159895145 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || ||||| || || | | || || | ||| ||||||| Sbjct 159895144 CTTGAGCGTGATGGTCTTCCCTATAAGGGTCTTTACAAAACTCTGCAT 159895097 >seq1 Length=282763074 Score = 102 bits (112), Expect = 2e-16 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||| | ||| ||| || || || || ||||| || || || || | |||| | Sbjct 255573174 ATGGAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCACCTTCCAGCT 255573232 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | ||||||||||||| || ||||| |||||||| || || |||| ||||| || || | Sbjct 255573233 GCTTACCAGCAAAGACCAACCTCTGCTGATCAGGAGGAGTTTCTTCCTTATCCTGGATCT 255573292 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||||| || || | ||| ||||| || || ||||| || || | Sbjct 255573293 TGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACTTCGAGCGTGATGGTCTTCCCTG 255573352 Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536 | | || || | ||| |||||||| Sbjct 255573353 TAAGGGTCTTCACAAAAATCTGCAT 255573377 >seq312 Length=159970021 Score = 96.9 bits (106), Expect = 7e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || || || |||| |||| || | ||||||||||| Sbjct 72456651 CTTTTGA-ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTCACCAGCAAAGA 72456709 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || ||||| | |||||| || |||||||| | ||| || || || |||||||| Sbjct 72456710 TCAACCTCTGCTCATCAGGAGGAATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTT 72456769 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| ||||| | ||| | || || || | ||| || || || | || || | || Sbjct 72456770 CTATAGTGTCTGAGGGTTCAGCCTCGAGCGTGAGGGTCTTCCCTGTAAGGGTCTTCACAA 72456829 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 72456830 AAATCTGCAT 72456839 >seq166 Length=122095297 Score = 84.2 bits (92), Expect = 4e-11 Identities = 126/179 (70%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| || || || |||| ||||| || |||||||||||| | ||||| Sbjct 98975392 TTGTAGTCAGACAAAGTACGGCCATCTTCCAACTGCTTACCAGCAAAG----ACCTCTGC 98975447 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 |||||||| || ||||||| |||| || || || |||||||| ||||| || Sbjct 98975448 TGATCAGGGGGAGTTCCTTCCCTATCCTGGATCTTCGCCTTTACATTTTCTATAGTGTCC 98975507 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || || || | ||||| || || || | | || | ||| |||||||| Sbjct 98975508 GAGGGTTCAACCTCGAGTCTGATGGTCTTCCCTGTAAGGCTCTTCACAAAAATCTGCAT 98975566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984467953964250