Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rattus_20norvegicus_20[refseq_20GCF_5F000001895.5_202014-07-01] 955 sequences; 2,870,184,193 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq297 107 6e-18 >seq297 Length=62275575 Score = 107 bits (118), Expect = 6e-18 Identities = 368/562 (65%), Gaps = 14/562 (2%) Strand=Plus/Plus Query 133103 GAGATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACTTCAACTGAAGTAGAT 133162 || || ||||||||||| || ||| | | | ||||||||| | || || || Sbjct 25392018 GATATCTGGCAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCCGAGGAGGTGGAC 25392077 Query 133163 TTATCCAAAGACC--CAGCCCACTGGGAAGCCCTTACTGGGGATGAAAAACATTTTATTT 133220 | ||||| || |||| |||||||||| || | ||||| | ||||||||| | Sbjct 25392078 CTTTCCAAGGATATTCAGC--ACTGGGAAGCTCTGAAACCAGATGAGAGACATTTTATAT 25392135 Query 133221 CT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACA 133279 || ||| || | || || ||||| ||||||||||| || || ||| || || | Sbjct 25392136 CTCATG-TTCTGGCCTTCTTTGCGGCGAGTGATGGCATAGTCAATGAGAACTTGGTGGAG 25392194 Query 133280 CGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCG 133339 || |||| |||||||||| | | || ||||| || ||||| | || ||||| Sbjct 25392195 CGATTTAGCCAAGAAGTTCAAGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCC 25392254 Query 133340 ATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACC 133399 ||||| || || || || | || | || ||||| |||||||| |||||| || Sbjct 25392255 ATGGAGAACATACACTCCGAAATGTACAGTCTCCTTATTGACACTTACATTAAAGATTCC 25392314 Query 133400 GTCCAGAAGCACA--AACTATTCAACGCCATTAGCGA-ATTTCCTTGTATTAAAAAGAAA 133456 |||| | | | || |||||||||||| | || | | |||||| | || ||||| Sbjct 25392315 --AAAGAAAGAGAATATCTCTTCAACGCCATT-GAGACAATGCCTTGTGTGAAGAAGAAG 25392371 Query 133457 TCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTT 133516 |||||||||| | ||||| |||||| || | | || || | || Sbjct 25392372 GCTGACTGGGCCTTGCGTTGGATTGGGGACAAAGAGGCTACGTATGGAGAACGAGTTGTG 25392431 Query 133517 GCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGC-TCTATTTTTTGGCT 133575 || || |||| ||||| || || || || |||| | || ||| || || || ||||| Sbjct 25392432 GCCTTCGCTGCGGTAGAAGGAATCTTCTTTTCTGGTTC-TTTTGCATCAATATTCTGGCT 25392490 Query 133576 TAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 || || || || | | || || || ||||| || ||||||||| || || || Sbjct 25392491 CAAGAAACGGGGACTGATGCCGGGCCTTACATTTTCCAATGAACTTATTAGCAGAGATGA 25392550 Query 133636 GGCACTTCACACCGAATTTGCC 133657 || || ||| || |||||| Sbjct 25392551 GGGTCTGCACTGTGACTTTGCC 25392572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799590931835